RNA id: TU83911


Basic Information

Item Value
RNA id TU83911
length 551
RNA type TUCP
GC content 0.48
exon number 1
gene id G73578
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8366806 ~ 8367627 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCCTCTTTGCCTCCTGCCTGGCAGCTCCATGTCCAACATTCTCCTACCAATATACTCACTCTCCCTCCTCTGAACATGTGCAAACCATCTTAATCTGGCCTCTCTAACTTTGTCCCCCAAACGTCCAACATGAGCTGTCCCTCTGATGTACTCGTTCCTAATTCTGTCCAACCTTGTCACTCCCATAGAGAACCTCAACATCTTCAGCTCTGCTACCTCCAACTCTGACTCCTGTCTCTTCCTCAGTGACACTGTCTCTAAACCATACAGCATGGCAGGTCTCACCACGGTCTTGTACACCATCCCCTTGATTCTCGCTGATATTTTCCTATCACACAGAACTCCCGACACCTTTCTCCACCCATTCCAACCTGCCTGCACTCGCTTCTTCACCTCCTTCCCACACTCTCCATTACTCTGGACTGTTGAGCCCAAGTACTTAAACTCCTGTACCTTCTTCACCTCTTCACCCTGTAATCTTACTGTTCCATTTCCCTCCCTTTCATTCACACACATGTACTCAGTCTTACTACGACTGACTTTCATTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83909 lncRNA upstream 1152 8365603 ~ 8365925 (+) True G73576
TU83708 lncRNA upstream 9573 8356066 ~ 8357504 (+) True CI01000012_08353036_08355661
TU83904 lncRNA upstream 89494 8277395 ~ 8277583 (+) True G73571
TU83870 lncRNA upstream 163910 8202862 ~ 8203167 (+) True G73537
TU83847 lncRNA upstream 213888 8152928 ~ 8153189 (+) True G73522
TU83915 lncRNA downstream 995 8368622 ~ 8369011 (+) True G73579
TU83920 lncRNA downstream 6400 8374027 ~ 8374232 (+) True G73583
TU83922 lncRNA downstream 18660 8386287 ~ 8391810 (+) True G73585
TU83928 lncRNA downstream 25954 8393581 ~ 8393812 (+) True G73591
TU83929 lncRNA downstream 27439 8395066 ~ 8395284 (+) True G73592
CI01000012_08353036_08355661.mRNA mRNA upstream 9662 8350829 ~ 8357415 (+) False CI01000012_08353036_08355661
CI01000012_08312903_08334243.mRNA mRNA upstream 32221 8312903 ~ 8334856 (+) True CI01000012_08312903_08334243
CI01000012_08307719_08308987.mRNA mRNA upstream 57856 8307719 ~ 8309221 (+) True CI01000012_08307719_08308987
CI01000012_08264407_08270366.mRNA mRNA upstream 96249 8264002 ~ 8270828 (+) True CI01000012_08264407_08270366
CI01000012_08234924_08239665.mRNA mRNA upstream 127192 8234759 ~ 8239885 (+) True CI01000012_08234924_08239665
CI01000012_08433577_08437269.mRNA mRNA downstream 65950 8433577 ~ 8437972 (+) True CI01000012_08433577_08437269
CI01000012_08464015_08470633.mRNA mRNA downstream 96388 8464015 ~ 8470764 (+) True CI01000012_08464015_08470633
CI01000012_08479030_08480715.mRNA mRNA downstream 109489 8477116 ~ 8481200 (+) True CI01000012_08479030_08480715
CI01000012_08526824_08531821.mRNA mRNA downstream 159197 8526824 ~ 8532163 (+) True CI01000012_08526824_08531821
CI01000012_08574591_08601981.mRNA mRNA downstream 206964 8574591 ~ 8601998 (+) True CI01000012_08574591_08601981
TU83614 other upstream 559222 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 2442772 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 2550472 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 2805644 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 2826621 5538525 ~ 5540456 (+) True G71221
TU85876 other downstream 1854328 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 2777190 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 4263128 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 4377904 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 4647879 13015506 ~ 13023794 (+) True G76462

Expression Profile