RNA id: TU83928


Basic Information

Item Value
RNA id TU83928
length 232
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G73591
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8393581 ~ 8393812 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCAAATCAATTATATACCCCAAATTAATTATATCTCATGTTTAATCACTATCTACATAAGAGCCAGCAGCAAATTCCTGAAGGACTGGCCAGCTCTCTGCGGGTACATGAGCATTAAATGGGCACTGACAGCCTGGAGCTCACATCTTGCGAAAGCGTCTAAACAAATTGTAAAATAGGCGCTGTTTATATATGAGTCACATATTTCAGGTTTAAATAACTACATTATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83922 lncRNA upstream 1771 8386287 ~ 8391810 (+) True G73585
TU83920 lncRNA upstream 19349 8374027 ~ 8374232 (+) True G73583
TU83915 lncRNA upstream 24570 8368622 ~ 8369011 (+) True G73579
TU83909 lncRNA upstream 27656 8365603 ~ 8365925 (+) True G73576
TU83708 lncRNA upstream 36077 8356066 ~ 8357504 (+) True CI01000012_08353036_08355661
TU83929 lncRNA downstream 1254 8395066 ~ 8395284 (+) True G73592
TU83930 lncRNA downstream 2592 8396404 ~ 8396736 (+) True G73593
TU83931 lncRNA downstream 19074 8412886 ~ 8413258 (+) True G73594
TU83932 lncRNA downstream 24374 8418186 ~ 8418418 (+) True G73595
TU83959 lncRNA downstream 26905 8420717 ~ 8421576 (+) True G73611
CI01000012_08353036_08355661.mRNA mRNA upstream 36166 8350829 ~ 8357415 (+) False CI01000012_08353036_08355661
CI01000012_08312903_08334243.mRNA mRNA upstream 58725 8312903 ~ 8334856 (+) True CI01000012_08312903_08334243
CI01000012_08307719_08308987.mRNA mRNA upstream 84360 8307719 ~ 8309221 (+) True CI01000012_08307719_08308987
CI01000012_08264407_08270366.mRNA mRNA upstream 122753 8264002 ~ 8270828 (+) True CI01000012_08264407_08270366
CI01000012_08234924_08239665.mRNA mRNA upstream 153696 8234759 ~ 8239885 (+) True CI01000012_08234924_08239665
CI01000012_08433577_08437269.mRNA mRNA downstream 39765 8433577 ~ 8437972 (+) True CI01000012_08433577_08437269
CI01000012_08464015_08470633.mRNA mRNA downstream 70203 8464015 ~ 8470764 (+) True CI01000012_08464015_08470633
CI01000012_08479030_08480715.mRNA mRNA downstream 83304 8477116 ~ 8481200 (+) True CI01000012_08479030_08480715
CI01000012_08526824_08531821.mRNA mRNA downstream 133012 8526824 ~ 8532163 (+) True CI01000012_08526824_08531821
CI01000012_08574591_08601981.mRNA mRNA downstream 180779 8574591 ~ 8601998 (+) True CI01000012_08574591_08601981
TU83914 other upstream 25954 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 25954 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 25954 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 585726 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 2469276 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU85876 other downstream 1828143 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 2751005 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 4236943 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 4351719 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 4621694 13015506 ~ 13023794 (+) True G76462

Expression Profile