RNA id: TU96027


Basic Information

Item Value
RNA id TU96027
length 2908
lncRNA type sense_over
GC content 0.43
exon number 3
gene id CI01000013_10756927_10790192
representative False

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10756927 ~ 10792761 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGGCAGCGGTGTCAGAGGAGCTGCGGTGCTGGTACCAGCGCTCATCTGGATCGCTAAAGGAGCACAGCCGCGTCACGCACACCAGCTCCAACTCTTCAGACGGCCGTGGAGGACGAATAGGGACGCTAGTGAAGGGGTCACCAGCTGCATCTCCACACAGTCAGAGGAGTGGAACTCCCTGTAGTGACCCTGCAGCTACGCCCCCCTGCAGCCCACAACACATACTCAATTGGCAGAGCGGATCACCGTTTACCGATAGTTGTTTCCTGAGCAGTCCCCTGTGCTCTGAGATAGCGGACGTGCAGTGGTACGGGCACGAGAAGGCAAAGCCGGGAACGCTCGTCTAAACCGTCATCCCTCATCCCTCTCTCTTTAAAAGAGTGTTCAGAAGGCAGGCCTGACCACAGCCTGGACCTCAACTCATCCGAACACACCTATGGCTGGAGCCAGTACCACCTCAACCTCTCTTTCATCTCTGTCTCTCTGTCTCTCCGGCGGTACAGTGCTTATGAACTATGGGAATACAAGACTCTGAATGAACTGAGCTTGACCTTGTCTGACCCTCCCCCTCAGACTTTTGAACTCTGACCCAGCTAGCTGGCAGCCGGTTCCTCCGTATGCACAAACCCTCCGTGTTTATTCCATCGCTGGAGTGATGTGCATAAGAGAGACGTCTTATGCGCATTGTACTATAAGTGAACCCCACTCATGCACACACACATGCTCAAATAGACATTCGTCCCCTGCTGTCGTGTGTGTCCCTCTGCACTAATGTCAGAGAGCCGGCGTCGTTCTCTCTCATGCACATGACATGCACAAAAACATTCCGATGGATTGCTTTGTCGTCAACCATCTTTGTAGATCTTTATGTTCTCAGTTCTGTTAAAAAAAACAAAAAACAATGTGACCACAAACCCCTCCTTCATCCTACAGCGCCCCTTCTCATTTGGACCGCAGTGCACCATAAGCCTCTGTCTGTGAACTTTGATATTTTGTGAATAACATTAGAGCATTTAAAATGGCAGAAGCCATTCTTCGGTCATCCCGGATTGGAAAACGAGCCCCGATATCATATCCCTCAAGATGGTGATGCCGCAAGCGCCACCAAACTACATAATTTCATGGAAATTCAAAACATTGTGGTCTTTGTATGTAATGTTGGTTTGTCATTCTCAAGTTCATTGGTTCTTGTCCAGAAAGTTCAACCATTTTTGCAGAACATTAGCTAACTTTTTTAGAAGCCATAGCTGTACAACAAATCTGAAGCATTAGGTTAGAGGCATTAGCATGACCCTCTGCGTTGAACGACCAATCTGTGAAGTACTGCAACTCAGGTGTACTTTGCTATTATGGCAACTTGCCACGATGGTGCTCTGAGTCTGAACTGTACATCCCACAATGCCCTGTTGTAAGCCCACACTGCATGCAGAACCGTCACAAACCCCCGCGTATAGTGTTGTGACATCAGTGAAGTGACGAGACACACAAAAAAACCTTCTCCAAACACTCCTGGCCTTATCGGTTTTCTGTTTTTATGTATCTGTTTTTAATATTCAGGATTTTACTTAACTATAACACCACTATGACATTATGATTACGTTCGTATTTATAAAACCGTCAGATGAGCACAACACAACGTGGCACACCGACTCAATATTTCAATGAAAATGACGTTACCTCTGCCCTGACCTGAGAACAGCATTCCAGAATGTGACGCGGTTAAAGCAGGTGCTTACTTTTAAAAGCCACTGGTAAAAAACCATAAGCTCAAACAATACAGGGTGTTTCATGCTTTCATCATGCAGTCATAAAAGATCCGACACCACGTGTGCCCCTCGCCTCGATCGTCCGACCGAGGAAAAACATCAAGCCATAACGCTAAAGACATTGTTAAACACTCTGCAAGATACGAAAAATATCGTACGTGCAAAGTACCTTAAGAAACAGGTAGCTAAAAGCACACCCTTTGCCATTACTACTCAATAGATCTTCAGAAATTCAATAGTTTGTACGTGCCGTTAACATAAACAGTCCTTACAAATGTGTATTCAAAAGGGTCCAAAACACCAGACGCTAAATCTAAAAGTCATCTTATTCACGCTCATTCACGGGCCTAAAAGTAGACGTTTTTATCTGCCCTAAATTGATTGATTGTTCATTCTTTTCATGCATGCTCAGCACACTGTGTAATGCATCTTGATGTTAAAATTAAAACCCAGTGTGAAAACAGCCCTAATCGAAAGTAAAACACCTCATCCACATCTACATTTAGAGGTCGTTCAGACCTCGTACCCTCTTATGCCAATGTGAGCTCACTCCTTTCGTCTACCTGTACTCGATAACAAAAACGTAAATCTTTTTATATTAAAAAAAAAACTAACACATTTATCAACATTTATAGGCAGGACTGTGGAAATTGGGTTCTTTTAAAAGACAACATAAAACCAATCGTTTAATGATTTTTATAAATCAGTATTCGTTTTATTTTCGGGTCTTTAAGCTGGGAAATAGCAACAACACGTTCAGGTGCTACAGGAAGACCAGTTGCTGCTTTGGTTTCCTAGCTGTAGACTTTTCCTAACTGTTGTCAATAGTTTTAATACCAGTTGTGCAAAATGAAGGACTTTAGTTACTAAACTGTCTTACCACTTCATCTTGACAATAGAGCATGTTTCATGAGTTCATTTTCAGATATAACCGGACACAATAAAATGTTGTTGTAGAAAAAATAAAGTGGAATTGTTGGGCAGGTTAAATATAACCAAATTCCACAGTTAATTTATTCTTTTTTCTATTAAGAATTTGTATAGTAACATTTTTCAAAAACCGTGTTGTTGGCAACTGATACTGAATTTTCCAGATGAGAAATGTGGTGGTTCTTGAGATTCTGAAATAAATTATTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96005 lncRNA upstream 46952 10712270 ~ 10737947 (+) True G84381
TU96032 lncRNA upstream 127322 10644446 ~ 10657577 (+) True G84386
TU96036 lncRNA upstream 141094 10633395 ~ 10643805 (+) True G84390
TU96052 lncRNA upstream 170522 10614151 ~ 10614377 (+) True G84405
TU96051 lncRNA upstream 172484 10612194 ~ 10612415 (+) True G84404
TU96058 lncRNA downstream 14798 10807309 ~ 10807963 (+) True G84410
TU96018 lncRNA downstream 49205 10841716 ~ 10850104 (+) False G84383
TU96019 lncRNA downstream 54267 10846778 ~ 10850104 (+) True G84383
TU96099 lncRNA downstream 112674 10905185 ~ 10905428 (+) True G84444
TU96100 lncRNA downstream 118662 10911173 ~ 10911440 (+) True G84445
CI01000013_10586449_10594082.mRNA mRNA upstream 190457 10585818 ~ 10594442 (+) True CI01000013_10586449_10594082
CI01000013_10502138_10525511.mRNA mRNA upstream 259225 10500690 ~ 10525674 (+) True CI01000013_10502138_10525511
CI01000013_10335904_10336688.mRNA mRNA upstream 448003 10335904 ~ 10336896 (+) True CI01000013_10335904_10336688
CI01000013_10261599_10283287.mRNA mRNA upstream 500932 10260271 ~ 10283967 (+) True CI01000013_10261599_10283287
CI01000013_09681047_09683275.mRNA mRNA upstream 1101466 9681047 ~ 9683433 (+) True CI01000013_09681047_09683275
CI01000013_10808688_10819703.mRNA mRNA downstream 16177 10808688 ~ 10819925 (+) True CI01000013_10808688_10819703
CI01000013_10821530_10827412.mRNA mRNA downstream 29019 10821530 ~ 10827977 (+) True CI01000013_10821530_10827412
CI01000013_10865753_10884937.mRNA mRNA downstream 73242 10865753 ~ 10886301 (+) True CI01000013_10865753_10884937
CI01000013_10916049_11031034.mRNA mRNA downstream 121184 10913695 ~ 11031159 (+) True CI01000013_10916049_11031034
CI01000013_11063977_11172626.mRNA mRNA downstream 271466 11063977 ~ 11172634 (+) True CI01000013_11063977_11172626
TU96004 other upstream 142 10772286 ~ 10784757 (+) False CI01000013_10756927_10790192
TU95833 other upstream 568937 10215127 ~ 10215962 (+) True G84250
TU95794 other upstream 705563 10076454 ~ 10079336 (+) True G84215
TU95773 other upstream 748106 10030608 ~ 10036793 (+) False G84194
TU95558 other upstream 1182715 9601611 ~ 9602184 (+) False G84005
TU96453 other downstream 1377478 12169989 ~ 12170818 (+) True G84768
TU96501 other downstream 1392431 12184942 ~ 12201975 (+) True G84790
TU96598 other downstream 1572538 12365049 ~ 12375905 (+) True G84864

Expression Profile