RNA id: CI01000016_02374077_02383616.mRNA


Basic Information

Item Value
RNA id CI01000016_02374077_02383616.mRNA
length 2722
RNA type mRNA
GC content 0.47
exon number 11
gene id CI01000016_02374077_02383616
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2373943 ~ 2384488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAGTGACTGTTTGCTGGATGAGGTACAGTTAAACATGACAGCTGCTTGATACTCCATGAGAGTTGAAGCAAGGCCGCTGTTCAGCACTCCCTGAGAACTAAAACACGACAGCTGTTCGACAGCTGTTACATGACCCTGGAGAACAGAGTTCGGTCCGTGCAAGTTGAATGCAAAGTATGTCCAATGCAGGTTTGTAATTACGAGTGCAGATCCGTTGAGTTTCAGGTGGGCGGCAAGCAGCTTAGGTGTCCAGTGGTCATACGATGTGGGGGAAGAAGCCTGGCAGATCTGGCTCAGATGCTGGATCTGAGCTCCAGCTCCGACAGTCTCGAGCTAGAGGCTGGTACACCCGTGCGTCTGACCCCTCAGAGGGAGTTCATTAAGTCTCTGATGGGCATCGGGAAGAGACTTGCCACTCTGCCCACTAAAGAACAGAAGACCCAGAGGCTCATCTCGGAGCTGTCCCTACTCAACCACAAGCTGCCTGCCCGGGTGTGGTTGCCCACGGCTGCCTTTGACCACCACGTGGTGCGCGTGCCCCATACGCAGGCCGTCGTGCTTAACTCAAAGGATAAGGCACCTTACTTAATCTATGTAGAAGTTCTGGAATGTGAGAACTTTGAGACGTCAAGTGTGCCTGTGAGGATCCCGGAAACACGGATCCGCAGCACGCGATCTGTAGAGAATCTTCCGGATTGTGGCATCACACCTGACCAGCGTGCCAGCAGCTTCTCCACAGTTCCCAATTACGATAACGATGATGAGGCATGGTCTGTAGATGACATTGGAGAGTTACAAGTGGAGCTTCCAGAGATCCACACCAACAGCTGTGACAACATCTCCCAGTTCTCAGTAGATAGCATCACCAGCCAAGAGAGCAAAGAACCTATTTTTATTGCAGCTGGAGATATCAGGCGACGCCTATCCGAGCAACTCGCCCACACCCCCACCACATTCAGAAGGGACCCAGAGGATCCCTCAGCTGTAGCCTTAAAGGAACCGTGGCAGGAGAAAGTGAGACGGATCAGGGAGGGCTCCCCCTATGGCCACCTGCCCAACTGGCGTCTACTTTCTGTTATTGTGAAATGTGGTGATGACCTGAGACAAGAGCTTCTCGCCTATCAAGTTCTGAAACAGCTGCAGATTATCTGGGAGCAAGAACGGGTTCCCTTGTGGATCAAGCCCTATAAGATCCTGGTCATTTCTTCAGACAGTGGCATGATTGAGCCAGTGGTCAACGCTGTGTCCATTCACCAGGTGAAGAAACAGAGTCAGCTTTTATTGCTCGACTACTTCCGGCAAGAGCATGGCAACTACACTACAGAGGAATTCCTTACTGCTCAGCGCAACTTTGTTCAGAGCTGCGCTGGCTACTGTCTCATCTGCTATCTGCTGCAGGTCAAGGACAGGCACAATGGAAATATCCTGCTGGACTCTGAGGGCCACATCATTCACATCGACTTTGGCTTCATCCTTTCCAGCTCTCCACGAAACCTAGGCTTCGAGACATCTGCCTTCAAACTAACCAGTGAATTTGTTGATGTAATGGGAGGTCTGGATGGAGACATGTTCAACTACTACAAGATGCTTATGCTCCAAGGCCTCATCGCTGCACGCAAGCACATGGAGAAGGTCATCCAGATTGTAGAAATCATGCAGCAAGGATCTCAGCTTCCCTGCTTCCACGGCTCCAGCACCATCCGTAACCTTAAGGAGCGTTTCCACATGAACCTGACGGAGGAGCAGCTGCAGGTGTTAGTGGAGCAGATGGTGGACGGCTCCATGCGTTCCATCACTACCAAGCTGTACGACGGCTTCCAGTATCTCACCAATGGCATCATGTGAGCGGCGACTGGGGTGCATACAGACTTGAGAGAGAAAACTGGAAAAAAAAGGCTGCACCACTTTAAAAACCACTCCCAATGCCCGCTTCCCATAACCACCCCTGTGTGTCTGCACCCTTCAGACTGATTATCTTTAAAGATGGATTTTTTGTTAGTTTTTTTACTTTGACTGAAGAGGTCTTGAGCTGTGAAGTAACCTTGTCGTCTTTTTTTTCCAACAGCCTTTCCTTTTGTTTTTTGTCATGTCATCTTACAGTACTCTGAATGCCTAGAGTTGAACTTTATCCAGCTTTCCAGTGCCTCATTTAAACACTAAGCTGCTCTGTGACTTCTGGTTTTACTCTCACCTGTGTACTGACTGACTTCAACCCCCCATAATATTATCATCATCAGCTTTTTTTTTGTTCGCATTACCACTTAATGCTGTACACTTCGGATGAATAACATTCAGAATTTCGACACACACATACAATGGGACGGGAAACAGGAGATGTTGTATCTACGCCTGTAAATTGCATTGTGAATTGAGGGAATCAGGTGGTAAACATTGCTGCATTGTTCAGCTTTGTGAAGTCAGTGTTACATTAACCGTTTAAGAGATCTTCAGAGCTCAGTGCCGCACAAAGAGCCATTAAGCCATGAAACATTTGCTTAAAGGGTTCTCATTTGGCCCTGTGAAGAGCGCTTTGCCCATAATAGGGTTAATGAAGCTTTTTAATTCAATATGGATTTGTTAAACGTCAAAACACCAAAGACAGACCAGTGGCTCCGCCAATCATACAAAAGTATTAATCTTTGATTGATTTGATATAAAAGCTAATATAAAATAATTAGGACTTAATTAAAATATCCTCATCTGTTTTCTAGGTCAAA

Function

GO: NA

KEGG:

id description
K19801 PI4KB; phosphatidylinositol 4-kinase B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107767 lncRNA upstream 15835 2357488 ~ 2358108 (+) True G94729
TU107762 lncRNA upstream 40351 2330526 ~ 2333592 (+) True G94726
TU107724 lncRNA upstream 102809 2199008 ~ 2271134 (+) True G94696
TU107727 lncRNA upstream 149124 2218624 ~ 2224819 (+) True G94698
TU106695 lncRNA upstream 268810 2104906 ~ 2105133 (+) True G93779
TU107934 lncRNA downstream 118639 2503127 ~ 2503442 (+) True G94848
TU107936 lncRNA downstream 124155 2508643 ~ 2508891 (+) True G94850
TU107965 lncRNA downstream 160263 2544751 ~ 2545005 (+) True G94874
TU107989 lncRNA downstream 307195 2691683 ~ 2692011 (+) True G94898
TU107992 lncRNA downstream 349260 2733748 ~ 2734245 (+) True G94901
CI01000016_02367430_02368661.mRNA mRNA upstream 5256 2367430 ~ 2368687 (+) True CI01000016_02367430_02368661
CI01000016_02355737_02362570.mRNA mRNA upstream 10697 2355737 ~ 2363246 (+) True CI01000016_02355737_02362570
CI01000016_02337039_02343109.mRNA mRNA upstream 30834 2337039 ~ 2343109 (+) True CI01000016_02337039_02343109
CI01000016_02235073_02261683.mRNA mRNA upstream 111635 2235073 ~ 2262308 (+) True CI01000016_02235073_02261683
CI01000016_02220464_02221013.mRNA mRNA upstream 152913 2220464 ~ 2221030 (+) False CI01000016_02220464_02221013
CI01000016_02385791_02400026.mRNA mRNA downstream 1303 2385791 ~ 2400452 (+) True CI01000016_02385791_02400026
CI01000016_02406070_02411794.mRNA mRNA downstream 21582 2406070 ~ 2412306 (+) True CI01000016_02406070_02411794
CI01000016_02415346_02420145.mRNA mRNA downstream 30858 2415346 ~ 2420145 (+) True CI01000016_02415346_02420145
CI01000016_02442140_02442481.mRNA mRNA downstream 55587 2440075 ~ 2442483 (+) True CI01000016_02442140_02442481
CI01000016_02448039_02451863.mRNA mRNA downstream 63551 2448039 ~ 2452319 (+) True CI01000016_02448039_02451863
TU106281 other upstream 1446411 905400 ~ 927532 (+) True G93406
TU108565 other downstream 1477687 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 1888148 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 2450070 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 2835392 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 3021381 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020090 False 3292 mRNA 0.51 12 NC_007127.7 38159857 ~ 38198806 (+)
bowfin (Amia calva) AMCG00012452 True 4592 mRNA 0.60 13 CM030138.1 18416963 ~ 18442351 (+)