RNA id: CI01000016_03845787_03847359.mRNA



Basic Information


Item Value
RNA id CI01000016_03845787_03847359.mRNA
length 1973
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000016_03845787_03847359
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3845787 ~ 3848448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGATCCAGACCATCTCAGGCTGGATCAGTGGATGCTCAACATGAAACAACAGAATTGGACTCCTAACAAGGGTTCTCGTCTGTGCAGTGAACACTTCGAGAGTCATCACTTCACCACTGACTCCAGGGGAAGGACATGTCTGAAGGACACCGCCGTGCCTACCGTTTTCTCTTTCTCCAAGGGCAAAGAACAAAAACCAAAAAGAAGAAGCTTGGTTAGTATTAATGAGGTGGTAAGTGGCATCCCTGTTTCTGCTGTAAATAATAATGAGGAGGTTGCATATGTAAACAATGGGAGTAGCGTCAACAGCCTTGCTGCCAATCAGAGAAATGTCATGATGATGGAAGACACATCTGAACAGGCCTTTGTTGCTCAAGATGTCATGCATGATGACATTGCTCTGACAGCGAATGTGTGTGAGGATGTTGGTTTGGCACAGCTGCCTAGCAGCTCTCTGAGTCTTTCAGAGTCTCCAAAAACACTTAAAAGGAAAGCTTATGAGGTAAAGGACAAGCTATGTGTAGGTAAAGGCAAGAGTTTCTTACTTGAAAGTCTGGATGATGTTCCCCGGGAGATCTTTCAGAGAATACAAAAGAAGAAAAGGTCAGTGTTTTCCAAAACCTTGAAGCAATTCACAACTACACTGCACTTCTACTCTCCAAAGGCCTATGACTATGTGAGAGAGAAGTTTCTCTTGGCTTTGCCTCATCCTCAGACCATAAGAAAATGGTACAGTAGCATCTCTGCAGATCCTGGATTTACTGTTGCTTCATTCACAGCTTTAAAAAGTCGTGTTGCTGAGCAGAAGAAAGTCGGAAAAGACACAGCATATCCTGCTAATATGGCAACGCCTTCCCGAAATGCAAGAGTGAAAACGCTGTGATGACACATTATCGTTAGGCTTGTTCGAGATGCATCGGCGCTGCGCACACCGATCGGCGTATGACATCAAACCCTCCATCCCAATGTGCATACTATCCACCCTATCCGCCCTAAATAGTATTGAATATTACTAATGTTACATACTATTTAGGATGGATAGTATGCGCATTGAGACACAGGCCAAGTACTGGGAGAGTGATTGTAAAGCATACGATTCCTTATGCTTTTGAATCGCTCTTGCTGTACTTTGATGTCATAGGCCGATCGGTCTGCGCAGCACCTATGCATCTCAAAACAAGTCTATTCTCTATTGAATCGGATCTTTTCAATGAATTATATGATTATAAAATATGTACATAATCGCAGAGTCTTTGAAACATTCCAGTTTTTTTGTCATTCCAAAATGAGATGGTGGTGTTTTATAAACTAAGTGGGCTAAACAACACTTAACATTTAAACATTATAAGATGCTGCAATAACAGCCAATAGGCAACTAATGTGGTCATTTTAAACATTTTTTCCCAATGTACTATTCATTATTTTTAAATGTAAAACATTTTTAATGCAGGGAAAATACTTAAACATAAATGATGAAGGCATAGTAAAAATTCAAAACAGTTTTAATGTGAGATTCATATATGACAAAAAGAAACATAAAAGTCAGCAATGAATGTATTGTTTTAGAAAAACATACACAGTGTAGGTTCTGGCTATAGGCCTACACGTCTTTTATGTTTGGAGAAAAAAAAAGTTTTATATTTAATAATAGTGTTGCGGTATGGCCAGTATTTTAATAAATTATTTTATTGTTTCAGTTGTACTGTTTTTATGGTGCCAAATTGTTTTTGATTCTCGTTGAGCGGTGCTTTGTAGTCCTGCATCGCACTAGTGCAGGCATTTTCACAGCGTGTTGCATTGTAGGGGGCGTGCTCTGGTTTTTGCGTGCACGCAATTGATCACTTCAACTGCCACTCACTCGTCTCGCAAAAGCAGATTGGTCAAGCATGTACAATCATCATCAGCCAAGCAAACACATTCATTGGGTTCTTTAGTGTGCAGATTGTTCGATGACCGTGGAATTTATGTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108591 lncRNA upstream 39787 3804708 ~ 3806000 (+) True G95465
TU108725 lncRNA upstream 75560 3769802 ~ 3770227 (+) True G95588
TU108664 lncRNA upstream 118290 3669705 ~ 3727497 (+) False G95533
TU108624 lncRNA downstream 85789 3934237 ~ 3962006 (+) True G95498
TU108626 lncRNA downstream 138324 3986772 ~ 3989111 (+) True G95500
TU108759 lncRNA downstream 144589 3993037 ~ 3993261 (+) True G95621
TU108760 lncRNA downstream 144826 3993274 ~ 3993474 (+) True G95622
TU108761 lncRNA downstream 145358 3993806 ~ 3994081 (+) True G95623
CI01000016_03809704_03831736.mRNA mRNA upstream 13387 3809704 ~ 3832400 (+) True CI01000016_03809704_03831736
CI01000016_03798165_03803686.mRNA mRNA upstream 41999 3798037 ~ 3803788 (+) False CI01000016_03798165_03803686
CI01000016_03780734_03792228.mRNA mRNA upstream 53371 3780447 ~ 3792416 (+) True CI01000016_03780734_03792228
CI01000016_03767260_03771612.mRNA mRNA upstream 73959 3767260 ~ 3771828 (+) False CI01000016_03767260_03771612
CI01000016_03726678_03729904.mRNA mRNA upstream 114777 3726443 ~ 3731010 (+) True CI01000016_03726678_03729904
CI01000016_03862433_03863305.mRNA mRNA downstream 13985 3862433 ~ 3863487 (+) False CI01000016_03862433_03863305
CI01000016_03865256_03876385.mRNA mRNA downstream 15350 3863798 ~ 3876451 (+) False CI01000016_03865256_03876385
CI01000016_03889898_03894185.mRNA mRNA downstream 40385 3888833 ~ 3894730 (+) True CI01000016_03889898_03894185
CI01000016_03895417_03896392.mRNA mRNA downstream 46879 3895327 ~ 3896450 (+) True CI01000016_03895417_03896392
CI01000016_03912450_03917198.mRNA mRNA downstream 63414 3911862 ~ 3917219 (+) True CI01000016_03912450_03917198
TU106281 other upstream 2918255 905400 ~ 927532 (+) True G93406
TU108565 other downstream 13727 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 424188 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 986110 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 1371432 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 1557421 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile