RNA id: CI01000016_03951956_03957698.mRNA



Basic Information


Item Value
RNA id CI01000016_03951956_03957698.mRNA
length 1471
RNA type mRNA
GC content 0.39
exon number 6
gene id CI01000016_03951956_03957698
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3951410 ~ 3957882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAAAAAGAAGAACTGCCTGAATGTGTGAGAATTCAAACCCCAAAGTATAAAGTGGGTTCAGAGATGATCAGACTGTTCTATGTGTGTTAAACTAACTGAGTTCTTACATTCTGTACTAACATGTTTCCCAACAAAGAGCTGACAGCTCAGAAAACACTAGAACTTAATCCAGAACATTAGATTACATTGGTTAGAGTAAAACACATATACAAGTGCGTGCGTGTTGCAAACAAACTTTGACACTTAAAGACGCCATTCAGAGTCTTAGTCCCAAAGATTAATTTACAATGAAAACTTGATGTTTGTTGCCATTATGGTCTCTTACAAAGCATCTCTGAATTGCATATTTGACTTAACAGTAATTCCATAAAAGCATATTTATAGTTTGTTCATCATGAGTAGTATAGTGTCACAGAAATGCAGCTGTATCATACTTTCAGTACTAAATATTCAGTTGGTCAGACTAGAGGAAGTTGACAACCACAGGAGGGGCTGATGATGTTTCAAGGAAGAAAGAAAAGAAAGACTGACAGAAACAGAAAATGGCTGATCAGTGTCATATGTGTCTGCTGGGACTGATCATTCTCTGTCCACTTCTGACAGGTATAAGTGGAGCAGAAGTAACTCAAGTGTTCAGCAGTTCTGGTGAAAATGTCCGTCTGCCCTGTAATAATGCTCTTCCTGGCTGCACATCAACTACATGGAACTATAACAGACATTCAGAGGCAGTTGAACTGATTACTTTAGGGATAAAGAAGAATGACATAGAGAGACGTGAGAGACTGAGTCTGGAGTCTGACTGCTCTCTGAACATCAAGAAAGTCACACAAGAAGATTATGGGCTTTACACCTGCAAACAATATGTGAATGGACAACAAGGAACTGATGCACCTGTTTATCTGCATTTTCTTCACGTCTCTTCATCATCCTCACAGACTGAGATCAGACCAGGCAGCTCTGTGACTCTCTACTGTCAGTTATATTATTATGGAGTCTCTTGTGATACTTTGGTCCGTACTGAGGGAATTGAGCTGATCTGGGTGAATCAGGCTGCTCCAGTCGATTCAACAACACTGATTCCAGTCAGCAGCTCAAACTCTGAGAAGAAATCAAGCCGAACTACAGCAGCAGCTCCAACACAAGAGATTGTGATTATTGTTAAGACTGCAGTGTTTGCTGCTCCGACTGTGATTCTTCTTCAGATCATCTGTGCAAGAAGAGCTGGAAGGAAAGACTCACACCGCCCAGAGGAAATGGAGATGCCTACTACAGTATTAGAATAAAACACACTCTGCACATTAAGGGCAAGATTTATCTTCATGTTTGTGGATATTATAATTTTCCAGTGCTCCATATTGTATAGACTGCTTTAAATATGATATTAAATACAGTGATCAACAAAGCAAGTACTAATGAATGGTTAATCTAAGTAAACATGAATGCTTATTTCAAGACAGAAATCATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108591 lncRNA upstream 145410 3804708 ~ 3806000 (+) True G95465
TU108725 lncRNA upstream 181183 3769802 ~ 3770227 (+) True G95588
TU108664 lncRNA upstream 223913 3669705 ~ 3727497 (+) False G95533
TU108626 lncRNA downstream 28890 3986772 ~ 3989111 (+) True G95500
TU108759 lncRNA downstream 35155 3993037 ~ 3993261 (+) True G95621
TU108760 lncRNA downstream 35392 3993274 ~ 3993474 (+) True G95622
TU108761 lncRNA downstream 35924 3993806 ~ 3994081 (+) True G95623
TU108764 lncRNA downstream 42899 4000781 ~ 4001100 (+) True G95626
CI01000016_03942653_03949757.mRNA mRNA upstream 1490 3942483 ~ 3949920 (+) True CI01000016_03942653_03949757
CI01000016_03912450_03917198.mRNA mRNA upstream 34191 3911862 ~ 3917219 (+) True CI01000016_03912450_03917198
CI01000016_03895417_03896392.mRNA mRNA upstream 54960 3895327 ~ 3896450 (+) True CI01000016_03895417_03896392
CI01000016_03889898_03894185.mRNA mRNA upstream 56680 3888833 ~ 3894730 (+) True CI01000016_03889898_03894185
CI01000016_03865256_03876385.mRNA mRNA upstream 74959 3863798 ~ 3876451 (+) False CI01000016_03865256_03876385
CI01000016_03965750_03967383.mRNA mRNA downstream 7616 3965498 ~ 3967397 (+) False CI01000016_03965750_03967383
CI01000016_03977127_03981586.mRNA mRNA downstream 19197 3977079 ~ 3982568 (+) True CI01000016_03977127_03981586
CI01000016_04008568_04016209.mRNA mRNA downstream 50638 4008520 ~ 4016502 (+) True CI01000016_04008568_04016209
CI01000016_04019056_04035116.mRNA mRNA downstream 61128 4019010 ~ 4035238 (+) True CI01000016_04019056_04035116
CI01000016_04038553_04043435.mRNA mRNA downstream 80622 4038504 ~ 4043574 (+) True CI01000016_04038553_04043435
TU108565 other upstream 87553 3862175 ~ 3862305 (+) True G95439
TU106281 other upstream 3023878 905400 ~ 927532 (+) True G93406
TU108786 other downstream 314754 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 876676 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 1261998 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 1447987 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other downstream 1448866 5406748 ~ 5406829 (+) True G95870

Expression Profile