RNA id: TU109978


Basic Information

Item Value
RNA id TU109978
length 342
lncRNA type antisense_over
GC content 0.48
exon number 5
gene id G96672
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3809510 ~ 3811499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGCTGTTTCATTGGACTGATTGGAGCGAGAGGGGACGGATGGAGGGAGGGAGGAGAGAAGCTCCATAAACATAGAGACAGGGCTCTCCATCGTCTGGTTTTGTGTTTGTGCATATGAGCTGTTCAGTGAATTGTTCATTACAGGCATGTGGTAACCTTTCTTGGAGCATGTGATCATCAGTTTCTTGGCCATTTCCCTGAAGTCTGCAGGTAGTTTCGGAAAGTCTATCGCTGACTGGTTACGATCAGGCATCTCTGATGTTATCCCAGCGAGGGACATTGCTGTAGCCCACTGGACTAGAAGAGAGAGGATCAAACCCTCTCTATAAAACCCCATCACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109908 lncRNA downstream 8542 3734525 ~ 3800968 (-) True G96626
TU109890 lncRNA downstream 17707 3787406 ~ 3791803 (-) True G96612
TU109904 lncRNA downstream 22735 3780804 ~ 3786775 (-) True G96622
TU109952 lncRNA downstream 175050 3634259 ~ 3634460 (-) True G96658
TU109893 lncRNA downstream 183506 3623837 ~ 3626004 (-) True G96614
TU109981 lncRNA upstream 8168 3819667 ~ 3820628 (-) True G96675
TU109911 lncRNA upstream 20026 3831525 ~ 3832562 (-) True G96629
TU109997 lncRNA upstream 50570 3862069 ~ 3887758 (-) True G96687
TU109996 lncRNA upstream 51666 3863165 ~ 3902758 (-) True G96686
TU109998 lncRNA upstream 53001 3864500 ~ 3864945 (-) True G96688
CI01000016_03719404_03722988.mRNA mRNA downstream 86452 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 133925 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03555967_03558776.mRNA mRNA downstream 250324 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03322103_03326683.mRNA mRNA downstream 478748 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 724852 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03834829_03843163.mRNA mRNA upstream 23001 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 68994 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03921124_03930996.mRNA mRNA upstream 108556 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_04044171_04047247.mRNA mRNA upstream 232516 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 273225 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
TU109910 other downstream 144197 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 823869 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1533235 2270836 ~ 2276275 (-) True G94786
TU110003 other upstream 54262 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1101209 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1514020 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1600760 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2347487 6158986 ~ 6159721 (-) True G97341

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022155 True 654 lncRNA 0.48 8 NC_007127.7 21999848 ~ 22006452 (-)