RNA id: TU108761


Basic Information

Item Value
RNA id TU108761
length 276
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G95623
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3993806 ~ 3994081 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATAACAAAAAAAACAGAAAAAACAACGAGAGCACAGTAAATCAGAAAGTATTAGCAATGTCCAGGAAAATCTGTATATGTTCTTCAATTGTGCGATCCATGATGATGAAGTCTCCTGTAATGTTTTGGTGGAGGAGGAATGAAGGCATACAGCAAAAGGAGTGAGAATCCAAACGCAATTTAATAATAGTTATAATCCAAGGTCTTAGTCCATACCAGGCAGAGGGTCAAGCACATTTAATCAGTCCGTACATACATAAACTCCACAAACGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108760 lncRNA upstream 332 3993274 ~ 3993474 (+) True G95622
TU108759 lncRNA upstream 545 3993037 ~ 3993261 (+) True G95621
TU108626 lncRNA upstream 4695 3986772 ~ 3989111 (+) True G95500
TU108624 lncRNA upstream 27386 3934237 ~ 3962006 (+) True G95498
TU108591 lncRNA upstream 187806 3804708 ~ 3806000 (+) True G95465
TU108764 lncRNA downstream 6700 4000781 ~ 4001100 (+) True G95626
TU108571 lncRNA downstream 83302 4077383 ~ 4181941 (+) True G95445
TU108787 lncRNA downstream 377500 4371581 ~ 4371833 (+) True G95649
TU108788 lncRNA downstream 378905 4372986 ~ 4373220 (+) True G95650
TU108798 lncRNA downstream 423807 4417888 ~ 4418614 (+) True G95659
CI01000016_03977127_03981586.mRNA mRNA upstream 11238 3977079 ~ 3982568 (+) True CI01000016_03977127_03981586
CI01000016_03965750_03967383.mRNA mRNA upstream 26409 3965498 ~ 3967397 (+) False CI01000016_03965750_03967383
CI01000016_03951956_03957698.mRNA mRNA upstream 35924 3951410 ~ 3957882 (+) True CI01000016_03951956_03957698
CI01000016_03942653_03949757.mRNA mRNA upstream 43886 3942483 ~ 3949920 (+) True CI01000016_03942653_03949757
CI01000016_03912450_03917198.mRNA mRNA upstream 76587 3911862 ~ 3917219 (+) True CI01000016_03912450_03917198
CI01000016_04008568_04016209.mRNA mRNA downstream 14439 4008520 ~ 4016502 (+) True CI01000016_04008568_04016209
CI01000016_04019056_04035116.mRNA mRNA downstream 24929 4019010 ~ 4035238 (+) True CI01000016_04019056_04035116
CI01000016_04038553_04043435.mRNA mRNA downstream 44423 4038504 ~ 4043574 (+) True CI01000016_04038553_04043435
CI01000016_04054332_04058529.mRNA mRNA downstream 59940 4054021 ~ 4058698 (+) True CI01000016_04054332_04058529
CI01000016_04062946_04083356.mRNA mRNA downstream 68622 4062703 ~ 4083560 (+) True CI01000016_04062946_04083356
TU108565 other upstream 129949 3862175 ~ 3862305 (+) True G95439
TU106281 other upstream 3066274 905400 ~ 927532 (+) True G93406
TU108786 other downstream 278555 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 840477 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 1225799 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 1411788 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other downstream 1412667 5406748 ~ 5406829 (+) True G95870

Expression Profile