RNA id: TU112739


Basic Information

Item Value
RNA id TU112739
length 285
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G99085
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9573167 ~ 9573451 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGGACTAATGGTTAGACAGTCCGACTGATAACCTGAAGGTTGTGGGTTCGATTCTCAATACCGGCAGGAAATGACTAAGGTTCCCTTGAGCAAGGCACCTAACCCCCAGTCACTCCCTGGGCACCACAGCAAAATGGCTGCCTACTGCTCCGGGTGTGTGTGTCCACTACTCACTACTCCTAATTCGGACAAATTCCGAGTATGGGTCACCATACTTGGCCTTTACATGTCACTTAACTTTTTGGGGCCTATTCACTCATATTACATGAAGTCACAGAGATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112736 lncRNA downstream 1658 9571223 ~ 9571509 (-) True G99082
TU112727 lncRNA downstream 12525 9560160 ~ 9560642 (-) True G99073
TU112732 lncRNA downstream 31880 9541025 ~ 9541287 (-) True G99078
TU112553 lncRNA downstream 38405 9534522 ~ 9534762 (-) True G98914
TU112545 lncRNA downstream 49869 9523028 ~ 9523298 (-) True G98906
TU112759 lncRNA upstream 8687 9582138 ~ 9582609 (-) True G99101
TU112780 lncRNA upstream 30395 9603846 ~ 9604471 (-) True G99119
TU112823 lncRNA upstream 174939 9748390 ~ 9749073 (-) True G99156
TU112743 lncRNA upstream 215860 9789311 ~ 9793229 (-) True G99087
TU112840 lncRNA upstream 225501 9798952 ~ 9799672 (-) True G99173
CI01000016_09510177_09512196.mRNA mRNA downstream 60802 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 84875 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09410080_09416286.mRNA mRNA downstream 155400 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09384358_09401878.mRNA mRNA downstream 171289 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09376209_09382250.mRNA mRNA downstream 190917 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09638800_09651752.mRNA mRNA upstream 65141 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09654611_09661197.mRNA mRNA upstream 80051 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09739013_09746676.mRNA mRNA upstream 165562 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09959197_09962175.mRNA mRNA upstream 384471 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 452051 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
TU112535 other downstream 60739 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 60805 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 60805 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 315556 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 333238 9234996 ~ 9239929 (-) True G98679
TU112845 other upstream 240910 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 477717 10051168 ~ 10052389 (-) True G100190

Expression Profile