RNA id: TU112840


Basic Information

Item Value
RNA id TU112840
length 721
lncRNA type intronic
GC content 0.35
exon number 1
gene id G99173
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9798952 ~ 9799672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTTATTTAAAGAGTCAAGTTACTTTCTAAAAGGTAATTTACATTATTTTGATTGCTACCATAGACATCAGTGTTATATCTGTTCTATGAATTTTTATTAAAACTACTTCTGTGATCATTTGAATTATTGTAACACAGAAATAGTGATACTTGTATGCAGTGTTGGGGAAAGTTAGTTTTAAGAGTAATGCATTACAATATTGCGTTACTCCCTAAAAAAATAACTTATTACGTTCATACCTACAGTACACATGACAATTGTGCTCTCTGGGTCAGCAGCCAATGCAGATTTGAATGTTTGCTGTGATCCTACATGTCAAAGGTTTAACAGACATAGATGAGTCGTTGTCATTTAGGAATAAGATTGCATGGGTTTTTGAATCAAGATCACAATATTTTAACGATTAATTGTGCAGCTCTCGTCAGAAGTCTATCTGTAATACCTAAGGAGGCAGATCACTAAGATTTGGAACAGAGCACATGGAGTAGAACACAGACAATCACATTCATTCATTCACTGGGAATGTTTCATGCACATTACTAACCTTTGGCATGAGGTTGTTCATTTAGAATACTCTAAATTCATTAACATTAGAACAAGGTTAAAGCCACAATATGTAACTTTTCACCACTAGAGGTCGCTTATTCAAAACAAAGGCGTAGCTTGATGACGGCTTGATTTCGTGGAATCATGGGAGGTGCTGTCTTCACGTCTACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112743 lncRNA downstream 5723 9789311 ~ 9793229 (-) True G99087
TU112823 lncRNA downstream 49879 9748390 ~ 9749073 (-) True G99156
TU112780 lncRNA downstream 194481 9603846 ~ 9604471 (-) True G99119
TU112759 lncRNA downstream 216343 9582138 ~ 9582609 (-) True G99101
TU112739 lncRNA downstream 225501 9573167 ~ 9573451 (-) True G99085
TU112847 lncRNA upstream 5644 9805316 ~ 9805914 (-) True G99180
TU112858 lncRNA upstream 26218 9825890 ~ 9835996 (-) True G99189
TU112870 lncRNA upstream 52534 9852206 ~ 9852437 (-) True G99201
TU112873 lncRNA upstream 55950 9855622 ~ 9855829 (-) True G99204
TU112889 lncRNA upstream 87701 9887373 ~ 9887587 (-) True G99216
CI01000016_09739013_09746676.mRNA mRNA downstream 52276 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 137755 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 147200 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09510177_09512196.mRNA mRNA downstream 286587 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 310660 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09959197_09962175.mRNA mRNA upstream 158250 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 225830 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10089136_10135299.mRNA mRNA upstream 289044 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 428642 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 586153 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
TU112535 other downstream 286524 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 286590 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 286590 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 541341 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 559023 9234996 ~ 9239929 (-) True G98679
TU112845 other upstream 14689 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 251496 10051168 ~ 10052389 (-) True G100190

Expression Profile