RNA id: TU112870


Basic Information

Item Value
RNA id TU112870
length 232
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G99201
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9852206 ~ 9852437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCCATGGCCACAGGTGTATAAAATCAAGCACCTAGGCATGCAGACTGCTTCTACAAACATTTGTGAAAGAATGAGTCGCTCTCAGGAGCTCAGTGAATTCAAGCGTGGTACCGTGATAGGTTGCCACCTGTGCAATAAGTCCATTCGTGAAATTTCCTCACTACTAAATATTCCACGGTCAACTGTTAGTGGTATCATAACAAAGTGGAAGCAATTGGGAACAACAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112858 lncRNA downstream 16210 9825890 ~ 9835996 (-) True G99189
TU112847 lncRNA downstream 46292 9805316 ~ 9805914 (-) True G99180
TU112840 lncRNA downstream 52534 9798952 ~ 9799672 (-) True G99173
TU112743 lncRNA downstream 58977 9789311 ~ 9793229 (-) True G99087
TU112823 lncRNA downstream 103133 9748390 ~ 9749073 (-) True G99156
TU112873 lncRNA upstream 3185 9855622 ~ 9855829 (-) True G99204
TU112889 lncRNA upstream 34936 9887373 ~ 9887587 (-) True G99216
TU112890 lncRNA upstream 35220 9887657 ~ 9888150 (-) True G99217
TU112898 lncRNA upstream 65459 9917896 ~ 9918176 (-) True G99225
TU112937 lncRNA upstream 110520 9962957 ~ 9963244 (-) True CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 105530 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 191009 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 200454 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09510177_09512196.mRNA mRNA downstream 339841 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 363914 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09959197_09962175.mRNA mRNA upstream 105485 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 173065 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10089136_10135299.mRNA mRNA upstream 236279 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 375877 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 533388 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
TU112845 other downstream 37251 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 339778 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 339844 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 339844 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 594595 9256102 ~ 9257611 (-) True G98691
TU114011 other upstream 198731 10051168 ~ 10052389 (-) True G100190

Expression Profile