RNA id: TU112858


Basic Information

Item Value
RNA id TU112858
length 807
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G99189
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9825890 ~ 9835996 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGATTTAATTTTTAGCAGCCATTCCTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATTATTCTAATTTGCTGAATTACTGCTCAAGAAATATATACAAAGAAGGAATTTTGATGAATATTTCAACTGTTTTTGTCCATACAATGAAAGACAATGGGGTCCAAAATGGCATTTTTTCAAAATATCTTCTTTTGTTTTCACAGATGAAAGAAATACAGATGAAACTGACCTGGAACCCCAGCCTTCATCCACATGTTAATGTCCGTTCCCTCTCCGTGTTCTTCAAGTGATGTGACATTGATGGCAGCCAACAGTTTCATCACCTCCTTCATGATTGCCCGAGCTTTGTCACTGCCAGTGAACTGCAGTCCCAGAGGGCGGAAGGTGCCCAGGTCAGACTCCATAACCATGTCAAAGTTTGAGATGTTGGCTTTGTGCTGTTGGAAGTACTGAGCAGCTCCCACCCCGCCAGGCTCCTCTGCAGACCACAGCACCGTCCTCAGTGTTCTTTTGGGACGCAACCCTAAGTCTCTGATCAAAGAAAGTGCCTCCCAGGAAATGGCGACTCCGCCTCCATCATCCATAGCGCCCTGGCCCACATCCCAGCTGTCCAGGTGACCACTGAGCAGCACCACCTGAAAGAGAGCCAGAGCAAAAAGCATACGAATGAACAGTAAAATAAATATTTAATAACATATTTTCTCAGCATCGTTTTCATATATAGTTACACAATTGTTTATTCATGTATAAAAAGGGTTTACATAACAGACTATAAAGGGAAAAAAGGCTTCCTGGCAAACTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112847 lncRNA downstream 19976 9805316 ~ 9805914 (-) True G99180
TU112840 lncRNA downstream 26218 9798952 ~ 9799672 (-) True G99173
TU112743 lncRNA downstream 32661 9789311 ~ 9793229 (-) True G99087
TU112823 lncRNA downstream 76817 9748390 ~ 9749073 (-) True G99156
TU112780 lncRNA downstream 221419 9603846 ~ 9604471 (-) True G99119
TU112870 lncRNA upstream 16210 9852206 ~ 9852437 (-) True G99201
TU112873 lncRNA upstream 19626 9855622 ~ 9855829 (-) True G99204
TU112889 lncRNA upstream 51377 9887373 ~ 9887587 (-) True G99216
TU112890 lncRNA upstream 51661 9887657 ~ 9888150 (-) True G99217
TU112898 lncRNA upstream 81900 9917896 ~ 9918176 (-) True G99225
CI01000016_09739013_09746676.mRNA mRNA downstream 79214 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 164693 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 174138 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09510177_09512196.mRNA mRNA downstream 313525 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 337598 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09959197_09962175.mRNA mRNA upstream 121926 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 189506 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10089136_10135299.mRNA mRNA upstream 252720 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 392318 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 549829 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
TU112845 other downstream 10935 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 313462 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 313528 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 313528 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 568279 9256102 ~ 9257611 (-) True G98691
TU114011 other upstream 215172 10051168 ~ 10052389 (-) True G100190

Expression Profile