RNA id: CI01000016_10089136_10135299.mRNA


Basic Information

Item Value
RNA id CI01000016_10089136_10135299.mRNA
length 1092
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01000016_10089136_10135299
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10088716 ~ 10135299 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCACCAGAATAACACAGTTGGCAACACGATGCAGAACGCCATGGCTCTCCTCAGCAATTTGATTGGACAGAAGGGCACGGACCTCCGACCGTTCTACCAGCAAGGTGTAATTGAGGTGGTGAGTAACGTCTTTGTGGAAGTCTCTGGCATGTATCTGGAGAAAGAAATGCACTCAGGGCTGAAGAGCTGCTCTTCTCTGCTCCTGTGTCTGCTGGACATCATCCACTGCCTGCTCAAAAACCTTTCATCTGTAGTCCGACTGGCCCTCCAGAGATCAGACAGTAATGAAAACACTGAGGCTGCAGAGGAACTACTACTCATCAACAAGCCACTGACAGACCTAAACAACCTCCTCATTCAACTGGTCACCCACAGTCCCATTAGACTCCTCAGCCTGATTTCCCCGATGCATCTACAAGCCCTGCTAAGTAAACAGGGTGGATTTGGGAGGCCGTCTAAGCAGCTGGCGTGTAATGACAGTGAGGTGTATGAGGAGGCCAGTCACTGTGTTTCTCTGCTGGCTCAGCTGTATGGAGGAGACGGCGCGGACCGCCTGCAGCCGGAGGAGCTGCTCAGCCTGGCACACGCACTGCAGATGCACACTGAGCCCAGACAGCAGAAATTGCTGCTCCGCGTGCTGAAACGATTGGTGAGTGTATGCAAAATCTGATCTGAGACCAGCTGAGCTGTACTCATGAATGCAATGTGAATGATCGTTGCAGTAAAAGCAAAAAAAAGTGTGATATTGGATATGATTTAAAATATGATACCGAATGGCTAAGCCATTTTTGAAGCATATTTTAAGTAGCTAAATTTTTACACTACACTAAACGGAGGACTTGTTATACTTTTTTAATTTTACCTTCCCTTTAGTGTTTAATATAGCTGTTTTTGCATGTAAACAATTGGCAAAGTTGCAAAGGGGCCCAGGGGCAGACTGGCCATCTGGAGCACCGGGAGTTTTCCAGTGTTCTGGTGTGAAGATGGATGGATGGATGGATGGATGGATGGATGGCGTAGCCCATCCTTCCTTCAGCACGTTCTAAGCGGTAGACCGGTCACAACACACTTTGGCAGGCTAAACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114060 lncRNA downstream 5083 10083319 ~ 10083633 (-) True G100236
TU114059 lncRNA downstream 5681 10082800 ~ 10083035 (-) True G100235
TU114045 lncRNA downstream 55440 10033014 ~ 10033276 (-) True G100224
TU114038 lncRNA downstream 66938 10021503 ~ 10021778 (-) True G100217
TU114037 lncRNA downstream 67616 10020803 ~ 10021100 (-) True G100216
TU114082 lncRNA upstream 549 10135848 ~ 10136074 (-) True G100256
TU114105 lncRNA upstream 62419 10197718 ~ 10198034 (-) True G100278
TU114110 lncRNA upstream 96363 10231662 ~ 10232146 (-) True G100283
TU114113 lncRNA upstream 105002 10240301 ~ 10240525 (-) True G100286
TU114114 lncRNA upstream 105887 10241186 ~ 10241465 (-) True G100287
CI01000016_10025722_10027148.mRNA mRNA downstream 61457 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_09959197_09962175.mRNA mRNA downstream 125531 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 342040 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 427519 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 436964 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_10228314_10299064.mRNA mRNA upstream 93015 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 250526 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 307546 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10571262_10572444.mRNA mRNA upstream 435406 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10600154_10633808.mRNA mRNA upstream 463903 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
TU114011 other downstream 36327 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 273761 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 576288 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 576354 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 576354 9511357 ~ 9511415 (-) False G98896

Expression Profile