RNA id: CI01000016_10571262_10572444.mRNA


Basic Information

Item Value
RNA id CI01000016_10571262_10572444.mRNA
length 2905
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000016_10571262_10572444
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10570705 ~ 10573868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAACGTCATGCTTCAATTCAAAGAAGACTCATTATTATTTTTAAGGAAAATTCATAGTTCAAGTAGCATCCAATCTAATCATTCTGATATGTAATCTGAGTGGCACCAAATGAAAAACAAGCATTGAAATGGATAGAGAGTATGAACATTTCTGAAATTCTTGTAGAAACCACTAGATGTCAATAGTATCAAAGAAGTTTAATTGCTCCATCTCTGTCCACTGTGCTAAAGCAGTGAGCCATGAGAGGCCCTGTACAATGATTTTATCACAATTGACCCTTAGCCAGGAGTTTGATTGACAAGCGATCTAACCAATCATAACGCCGGATCCGCCATTTTGTCCGACAAAGCAGTCAGGAGTTAGAAGATTAACCTCGGTGGACTTGAAATTGAAAAATGGTGTGTACTGACGTCTTTCCGCGTTTGAAACAACATTCCTTCTCATGTTCATTCATGTTTATTTGATGCTATAATTTAACTAGTAGGAAGAGATGATCGGTTCATGAACCGCTTGATCTCAGGCGCAGCGATCTGTCACGACACGTTAAAGAGCCACAAAACGGTTTTTATTGTTTGAATTACACAATTTGAAAGATGGAACTTTGTTTAATATCATAAGTAACCTGCTCTGTCTTGTCTGTCGACGTGTTGTCAGTGTCTTCTTTGCTCCACGATGTATTTTTCACTCTGTGTGGCGTGACAACGCCATGGCTCGTCAGACAAAGCAACAGTAACTAAGGGGGGTGGGTCTTTGCGAAGGGTCATTTGTGTTCTTAGACAAGACATGATTCTTATTTGAATCACAATTATTCTAAGTAATATAGTTCATTTGTGTAGATAGACTTGGCTACACAGCAAAATCCCAGTGTTAAATTAACACTCCTCAGTGCACATATGTGTCCACACAGGGTGTTAAAATAACACTGAAGCAGTTAATGAGAATTAAGTGACTAAGGGTTAGTTGTCATTAATTACTCACCCTCATGCCGTTCCTCACCCATAAGACCTTCGATAAACAAAATTAGATATTAAGATATTTTTGATGAAATCCGAGAGGTATATGACTTGTCCATAGACAGCAATATAATCAACACTTTCAAGGTCCAGAAAGGTACTAAAGACATTTTTTAAAACAGTTGATGTGACTACAGTGGTTCAACCTTAATTTTATGAAGTGACGAGAATACTTTTTGTGCGCAAAAACAAAACAAAAAGAACAACTTCATTCAACAATCTCTTCTCTTCCCTGTCATTATCCTTATGCAGGTGATGCAGTAAGCACAGTGAAGCATGCGGACACAGTGAAGCACAGTGTCTATGCGGATGAGGAAGATCACAAGGCTTTCACAAGACCTCCCAACATGGCCTGGGTGCAGTATGCCTTCAGCGAGGACGGTCTGTGGCATTCGCATCAAGGGCTCTCATGCCTACTGAATCCCGTTATGCTCAGATTGAAAAAGAAATGCTGGCACTCGTGTTTGCGACAAAAAAATTCCATGATTTTATCTACGGACGGCCAGTCACTGTAGAAATTGATCATCAGCCCTTGATAACCATATTAAAGAAGCCACACCACACAGACTCACCCCGCTTACAGGGTATGATGATGAAACTGCACCGCTACCACCTAGATGTGATCTTCAAATGTGGTAAGAAGCTGTTTGTGGCTGATGCATTGTCCTGGGCCCACCTTTCCACATCTGAGCCACAACTCACTGATGACCTGCTGGAAGTCATGACTATCCAGGTACTCTCTTCTCGTCGCATAGAGGAACTAAGGGCTGCTGTGCAAAGAGATGTCACATGCCAACAGCTCTCTGATATGATCAGGAAGGGTTGGCCAGCTACCTCAAAAGAACTTCCATACTGCTTGTGTCCTTTCTTCTCAATGAGAGATGAGCTGACCATTCAGGATGATTTGCTGCTTTGTGGGGAAAGATTTATCATCCCATCCGCACTGCAAAAGTTCTATGTTGCTCAGCTACATCAGGGCCATCCCGGCATCACAGCAACTAAACGCAGAGCAAAGGAAACAATGTACTGGCCATCAATGTACAGTGATATCGACACTGAAATCTCTCGCTGTGCATCCTGCAACGCACTCAGTTTTCAGATTTTGCGCACACATGGGACTTTAAGCACATTCGCAGCAGCCCTTGCTATCCTCAGTCCAATGGGCTGGCTGAGCGGGCAGTCAGATCTGCCATGCACCTTCTGGAAAAATGCTACCATGACAATACTGACATCCATGCTGCCCTTCTTCATCTTCGGAATCTTCCCCGGGATGCCTTACCTTCCCCTGCACAAAGACTGCTTTCCAGGCAAACAAGGACCTTCCTCCCAGTGACGAAGCCCATGCTTCACCCTGTTGTCCAAACTAACGTAAAAGAAACACTCACAAAACAAAGAATGAGGGGGAAAGACTATTATGACAGAAATGCACATCAGCTCCCTGCTCTGAAGCTGGGGCAAACTGTCAGGATGCAAACAGCACATGGTTTTGAGCAACCAAATAGCCCATGTAACAGCCTCAGTCCCCTAAAGTGGCACTGACACAGACAACAAGTGTTCACTGGTGACTCGTTCTGGAAGAGTCAGCCGCCCTAACCAACATTACAAAGACTATGTTTTGACCTGATTGATATGTGTTATGCAAATCTAGTTCATTATCATTCTTGTTCAAGCATTATGTAATTTTGCTACGGAAACATTCCCCTTATTGCACTTATTCTTTGTTATCAGATGTCTTGTTGTTGATTGTATTTAACGTTGCTATTTTCTCACTAGATTGTCTCCCTCTGGAAGAAGGGGGATGTAGCATTATGTGTGGTTTCACTTTAAGTCACGGCCTCATGTGAATGACGTCATTAGGCATGGCTGGGATATAGAGGCGTGTGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114187 lncRNA downstream 19281 10529416 ~ 10551424 (-) False G100351
TU114186 lncRNA downstream 19281 10549596 ~ 10551424 (-) False G100351
TU114188 lncRNA downstream 19281 10549596 ~ 10551424 (-) True G100351
TU114221 lncRNA downstream 91853 10476982 ~ 10478852 (-) True G100379
TU114218 lncRNA downstream 94570 10475251 ~ 10476135 (-) True G100378
TU114256 lncRNA upstream 78875 10652743 ~ 10715678 (-) True G100413
TU114191 lncRNA upstream 91561 10665429 ~ 10681706 (-) True G100352
TU114183 lncRNA upstream 162680 10736548 ~ 10736879 (-) False G100350
TU114184 lncRNA upstream 162719 10736587 ~ 10736879 (-) True G100350
TU114178 lncRNA upstream 163085 10736953 ~ 10737372 (-) True G100346
CI01000016_10443526_10488009.mRNA mRNA downstream 82519 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10386099_10386648.mRNA mRNA downstream 183223 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10228314_10299064.mRNA mRNA downstream 271641 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10089136_10135299.mRNA mRNA downstream 435406 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10025722_10027148.mRNA mRNA downstream 543446 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10600154_10633808.mRNA mRNA upstream 25334 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
CI01000016_10637748_10650217.mRNA mRNA upstream 63771 10637639 ~ 10650217 (-) True CI01000016_10637748_10650217
CI01000016_10740961_10745890.mRNA mRNA upstream 166078 10739946 ~ 10745890 (-) True CI01000016_10740961_10745890
CI01000016_10799559_10842613.mRNA mRNA upstream 225317 10799185 ~ 10843409 (-) True CI01000016_10799559_10842613
CI01000016_10897488_10911334.mRNA mRNA upstream 322318 10896186 ~ 10911334 (-) True CI01000016_10897488_10911334
TU114011 other downstream 518316 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 755750 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 1058277 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 1058343 9511357 ~ 9511415 (-) False G98896

Expression Profile