RNA id: CI01000016_10637748_10650217.mRNA


Basic Information

Item Value
RNA id CI01000016_10637748_10650217.mRNA
length 1420
RNA type mRNA
GC content 0.49
exon number 8
gene id CI01000016_10637748_10650217
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10637639 ~ 10650217 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTGAATGAAAACTCCCTCCAAAGGCTAAATGGTTATCTGGAAAATCTTCAAAAGCCTGGGGCGAGATCCCCCAAACCTACAAAACTCACTTTTTATGTCAGGGACACAAAAGAAAGAGCAGACTCCAGTGGTAGTCTCCTAGCCTCAGGATTCCGGTCTGTGAGTTTCACCCTGCAGTCAAAGGATGTTCTGAGCACAGTGCTGGATGTTCTGAGGTCCTGTAGCCTCTCGGTTGAACATATGCAGGATGTGCTTAAGGCTGAGACCAAGAAGAGCTCAACACAACAGCCTGAAACAGCTTTCTATCGGCCCATCAAATGGGACAAGACTTATTACACTTTCACTGGCTTCAGGGACCCAGAGCAGGAGTTAGAGCAAGCCAAGAGAGTGGAGCCCACACTCAGTTTATGGCTGAGAAACAATGAGCCGGAGGCCACAAAGAAACAGAATGCCAGTCTTCCACACCGTGAGGAGCTGAAAAGATTGAAAAGAGTGCTGATTCAGAAACTTGGTTTGTTGGATATCAGGTGGCAGCGCAAATGGGGAGTTTCACACAAATGCTGTCAGCTGCAGAGTCTGAGTCGTCTTTACACACAAAGCCCTGAGGCTCTGCACAACCTGAAAGGACACATAATAGTTTTTACTGACCAATCAGGGATGAATGCCTCAGGCCATGTGATGTTAGGAACAATGGATGTCCACCATCAATGGTCAAAGCTCTTTCAAAGATTACCAAGTTACCGAAGCCTGTTCCAGCAGTCGGATTGGCTGAAGGAGCGCATCAGTCACCTTTTGGGAGGGATTCAGGTGATTCACATCAAGCGGATGGGTCCAGCTCTTCCTCTGGAGGAACACTACAGTACCCTCAACACCTTCCACAAGAGATTGTTGCCTCAGCGCCTCTTCCTGCACCCCCGCAGCCTGCAAGGCCTCATGATGACCTTGGAAAATGACCGGTCCACCCCCTGCCTGCATGAGATGGGCCACTTCATCATCCCCACTATGTGTGACACCCTCCAGCTGCAGAACTTCCTCCAGAGCCAGGCCCAGGAGGCCCGGAGACGCATTCAGCGGAAGGACAAGTTGGAGGCAGAGGAAGAAGACATCATTTCGAGTTGTCTGCAGGATTTGTCTCTGCGCAGTCTGTCTAAAGAGCCCAGCGTGTCGAGCAGTCAGATGATCCCCTGCTGCAGGCGTCTGATGGAAGAGAGATCCCCTCAGATGCAGGGTCTTCATCTGTGCGTCTCTCACTTCTATTCAGTCATGCAGGATGGGGATCTGTGTATTCCCTGGGACTGGAAAGGCTGAAACACACTGAACTTTATTGGGACTTTATTACTATGACTCTCAGGCTCATGTAGTCACAACAAGATTCTGAAATTTTGGAAACAGCCTATTGTGTAGGCATGATTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114187 lncRNA downstream 86215 10529416 ~ 10551424 (-) False G100351
TU114186 lncRNA downstream 86215 10549596 ~ 10551424 (-) False G100351
TU114188 lncRNA downstream 86215 10549596 ~ 10551424 (-) True G100351
TU114221 lncRNA downstream 158787 10476982 ~ 10478852 (-) True G100379
TU114218 lncRNA downstream 161504 10475251 ~ 10476135 (-) True G100378
TU114256 lncRNA upstream 2526 10652743 ~ 10715678 (-) True G100413
TU114191 lncRNA upstream 15212 10665429 ~ 10681706 (-) True G100352
TU114183 lncRNA upstream 86331 10736548 ~ 10736879 (-) False G100350
TU114184 lncRNA upstream 86370 10736587 ~ 10736879 (-) True G100350
TU114178 lncRNA upstream 86736 10736953 ~ 10737372 (-) True G100346
CI01000016_10600154_10633808.mRNA mRNA downstream 3831 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
CI01000016_10571262_10572444.mRNA mRNA downstream 63771 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10443526_10488009.mRNA mRNA downstream 149453 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10386099_10386648.mRNA mRNA downstream 250157 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10228314_10299064.mRNA mRNA downstream 338575 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10740961_10745890.mRNA mRNA upstream 89729 10739946 ~ 10745890 (-) True CI01000016_10740961_10745890
CI01000016_10799559_10842613.mRNA mRNA upstream 148968 10799185 ~ 10843409 (-) True CI01000016_10799559_10842613
CI01000016_10897488_10911334.mRNA mRNA upstream 245969 10896186 ~ 10911334 (-) True CI01000016_10897488_10911334
CI01000016_10931329_10940939.mRNA mRNA upstream 280595 10930812 ~ 10941053 (-) True CI01000016_10931329_10940939
CI01000016_10970952_10971167.mRNA mRNA upstream 320290 10970507 ~ 10971167 (-) True CI01000016_10970952_10971167
TU114011 other downstream 585250 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 822684 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 1125211 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 1125277 9511357 ~ 9511415 (-) False G98896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020509 False 4302 mRNA 0.40 11 NC_007127.7 7802730 ~ 7828848 (-)