RNA id: CI01000016_10443526_10488009.mRNA


Basic Information

Item Value
RNA id CI01000016_10443526_10488009.mRNA
length 2814
RNA type mRNA
GC content 0.41
exon number 12
gene id CI01000016_10443526_10488009
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10442845 ~ 10488186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTATATGATAAGAAATTTCAATGTAATGCCAAGCCAATCCAATAATGTTAACACCAACTTGAAATTCATTATGAACACATGGGAGTCTAGGATCATGTTTTAATTATTATTATTATTATTATGTAATTGTGCGTAAATAGTACAATTCCGACAGCCAGAACGATGCTGACCTAAATGAAGATAAATGTCTTAGCATCTGCCGTGTTTATTGAACCAATCAGAATAGAGAGTCAGCGAGAAGCTCATTTGATTGGCCACAAGAAGAAGGACCCGCCTTCCTCTTCACACTTGCAAAACTCAGTGAGTGAGAGAATCATGCCAAAACTGGAGTTGTTGACTGCACAACAGAATGATCCTGGGTTACAGCAATTGTTTGAGGATGTTATTCCAACCCAGGAGAATCTCAATATCATCTTTGCCTGTGGCAGTAATAATGGAGGGTTCTTCTTCCGAACTGCAATGCTCTCAAATAATACACTGGAGATTACAAATAAACTTAATGTAACCAATATCCAGGGTTTGATAGAGTCAAGCTTGATACAGTGTGTTTTCAACATCCCCATTAATGGAATCGTCATCAGTTTCCTAAGCAATGCCAACGTCACAAATTTCAAAATCAGCAACAAGTTTAATGTATTCCTTGACATCTTGAAGGGTTCAACCAGTGGTAAGTTTGTTTATATTTCAACACATTACAGCGTATTCTCCCGTTTCCTGCATTCTCCAAGATCTACCCCGTTTCTCCTGAAGAAAGACTCCGTCCATTACCTTCCTACCGCTGTATCCATGTCTGCTGGATATTTCCCCGATTCACGAGCTGCGTGCCCTGTTTCAGTCTATAGTCACAGCAGCTACAACTATCAGAGGAAGATCAGCAAAACACTCCCAGAAGACATGGAGAGTAAGCTGATGATTTTAGTGGTTTGTATGATTGGCTGTGCAGTGTCTTGCATTAAGGCTCATGACTACCCATCAACAAATTTGACTTCCAAAATCACCAACAATGAGTGTGGAAAAACCAAACAGTGTTTGGACAGCCCTGAAGGATGTGATCCTTCGGGTAGCTCTCAGTGTTTCTTCACCTCAGTTACCTTAACTAACATCAGCATTACGGTTGAGCTCAGTGGCAGCTCTACCGGTTACATCGCTTTAGCAGCTGGACTGACATCTAATGTGTCTCAGCCTAATGTAACCAATATCCAGGGTTCCATACAGTCAAGCTTGATTCAGTGTGTTTTCAGCATCCCCATTGATGAAAAAATCACACCCTACCTAAGCTATGTCAGCGGCTCACATTTCAACGCCAGCGACATTGCTAACTCCCACATTCCCGTATTCCTTGACATCTTTAATGGTTCAACAAATGGAACTGAGCTGGGAACACCAACAAGTGTACTTCAGTCATCTGTCCTGGTTAATCTAACCAACGTGAATTCTACTAATGTTGTAATCACCCCAGCTAGCACCCCAGCTAGCACTCCAGCTAGCACCCCATCTAGCACTCCAGCTAGCACCCCAGCTAGCACCTCAGCTAGCACTCCAGCTAGAACCACAGCTAGCACCCCAGCTAGCACTCCAGCTAGAACCACAGCTAGCACTCCAGCTAGCACCCCATCTAGCACTCCAGCTAGCACCCCAGCTAGCACCTCAGCTAGCACTCCAGCTAGCACCCCAGCTAGCACCCCAGCTAGCACTCCAGCTAGAACCACAGCTAGCATTCCAGCTAGCATTCCAGCTAGAACCACAGCTAGCACCCCATCTAGCACCCCATCTAGCACTCCAGCTAGCACCCCAGCTAGCACTCCAGCTAGAACCACAGCTAGCACCCCAGCTAGCACTCCAGCTAGCACTCCACCTCATTCAAATGCCAGCATCTCACTCACCAGTCATGGAACTGAGCTGGGAACACCAACAAGTGTACTTCAGTCGTCTGTTCAGGTTAATCTAACTGATGTGACTTCTACTAATGTTGTAAGCACCCCAGCTAGCACTCCAACTAGCACCACAACTAGCACCACAACTAAGACCACAACTAAGACCCCAGCTCATTCAAATGCCAGCATCTCATTCACCAGCCTATTGAGTCATGCTGCAATTTGCTTTCTTAGCATCTTCTTGCATCTGATCTGATGAGACCCGAGAGAGACCTGAGGACTAATCATGCTTTAGAGTAGTATATGAATATGTAGTAACGTTGACATGTTTGCCAAAAATATTCTTATTTCTATTGGCTTCTTTCCTTGTCTGATTCTTGATTATTCACAAATACAGTCAAACCAAAATTTAGTCAGACACCTTGAACATTTCATTCATTAATACAGTTTATTCACTATAGTTTAAAAAAAAAAGGTAATAAAAAATGACAAGATCTCAGAGTTAAACTGTCAGAAAAAAATAATCTTAATTATGTCAGATAACACTTAAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATTTTTGGTTTCAAATTTTTATCAATTTTAATGGTAGTCCACTGTATAAAGAATTTTTGGGTATAATATACCACAGTTTACCTTATTTTACTATCCTCACTTACATAGTGTCTTCTACCCACTAGTCAAAATATATAAAAAATGTCTGGTTCAAAATGTTTTGGTTTGACTGTATATAAAAAACCTACTTTTAATTGACATATACATGGTGTTAGGTATGTTATCCACATAAAAATCCTACTTTTTTTGTTGTGGTGTTTTAATGATTTTCTAACATTGTTTACTGATAGTGGAAATGATCAATTTAATGAAAATTTAAACTTGTATTTTGAAAACAATTTGAAGTTATATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114153 lncRNA downstream 90715 10333883 ~ 10352130 (-) True G100324
TU114129 lncRNA downstream 155354 10287251 ~ 10287491 (-) True G100302
TU114128 lncRNA downstream 155650 10286979 ~ 10287195 (-) True G100301
TU114125 lncRNA downstream 174673 10267886 ~ 10268172 (-) True G100298
TU114123 lncRNA downstream 176176 10266451 ~ 10266669 (-) True G100296
TU114187 lncRNA upstream 41230 10529416 ~ 10551424 (-) False G100351
TU114186 lncRNA upstream 61410 10549596 ~ 10551424 (-) False G100351
TU114188 lncRNA upstream 61410 10549596 ~ 10551424 (-) True G100351
TU114256 lncRNA upstream 164557 10652743 ~ 10715678 (-) True G100413
TU114191 lncRNA upstream 177243 10665429 ~ 10681706 (-) True G100352
CI01000016_10386099_10386648.mRNA mRNA downstream 55363 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10228314_10299064.mRNA mRNA downstream 143781 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10089136_10135299.mRNA mRNA downstream 307546 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10025722_10027148.mRNA mRNA downstream 415586 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_09959197_09962175.mRNA mRNA downstream 479660 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10571262_10572444.mRNA mRNA upstream 82519 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10600154_10633808.mRNA mRNA upstream 111016 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
CI01000016_10637748_10650217.mRNA mRNA upstream 149453 10637639 ~ 10650217 (-) True CI01000016_10637748_10650217
CI01000016_10740961_10745890.mRNA mRNA upstream 251760 10739946 ~ 10745890 (-) True CI01000016_10740961_10745890
CI01000016_10799559_10842613.mRNA mRNA upstream 310999 10799185 ~ 10843409 (-) True CI01000016_10799559_10842613
TU114011 other downstream 390456 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 627890 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 930417 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 930483 9511357 ~ 9511415 (-) False G98896

Expression Profile