CI01000016_10571262_10572444


Basic Information

Item Value
gene id CI01000016_10571262_10572444
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10570705 ~ 10573868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_10571262_10572444.mRNA
ACAACGTCATGCTTCAATTCAAAGAAGACTCATTATTATTTTTAAGGAAAATTCATAGTTCAAGTAGCATCCAATCTAATCATTCTGATATGTAATCTGAGTGGCACCAAATGAAAAACAAGCATTGAAATGGATAGAGAGTATGAACATTTCTGAAATTCTTGTAGAAACCACTAGATGTCAATAGTATCAAAGAAGTTTAATTGCTCCATCTCTGTCCACTGTGCTAAAGCAGTGAGCCATGAGAGGCCCTGTACAATGATTTTATCACAATTGACCCTTAGCCAGGAGTTTGATTGACAAGCGATCTAACCAATCATAACGCCGGATCCGCCATTTTGTCCGACAAAGCAGTCAGGAGTTAGAAGATTAACCTCGGTGGACTTGAAATTGAAAAATGGTGTGTACTGACGTCTTTCCGCGTTTGAAACAACATTCCTTCTCATGTTCATTCATGTTTATTTGATGCTATAATTTAACTAGTAGGAAGAGATGATCGGTTCATGAACCGCTTGATCTCAGGCGCAGCGATCTGTCACGACACGTTAAAGAGCCACAAAACGGTTTTTATTGTTTGAATTACACAATTTGAAAGATGGAACTTTGTTTAATATCATAAGTAACCTGCTCTGTCTTGTCTGTCGACGTGTTGTCAGTGTCTTCTTTGCTCCACGATGTATTTTTCACTCTGTGTGGCGTGACAACGCCATGGCTCGTCAGACAAAGCAACAGTAACTAAGGGGGGTGGGTCTTTGCGAAGGGTCATTTGTGTTCTTAGACAAGACATGATTCTTATTTGAATCACAATTATTCTAAGTAATATAGTTCATTTGTGTAGATAGACTTGGCTACACAGCAAAATCCCAGTGTTAAATTAACACTCCTCAGTGCACATATGTGTCCACACAGGGTGTTAAAATAACACTGAAGCAGTTAATGAGAATTAAGTGACTAAGGGTTAGTTGTCATTAATTACTCACCCTCATGCCGTTCCTCACCCATAAGACCTTCGATAAACAAAATTAGATATTAAGATATTTTTGATGAAATCCGAGAGGTATATGACTTGTCCATAGACAGCAATATAATCAACACTTTCAAGGTCCAGAAAGGTACTAAAGACATTTTTTAAAACAGTTGATGTGACTACAGTGGTTCAACCTTAATTTTATGAAGTGACGAGAATACTTTTTGTGCGCAAAAACAAAACAAAAAGAACAACTTCATTCAACAATCTCTTCTCTTCCCTGTCATTATCCTTATGCAGGTGATGCAGTAAGCACAGTGAAGCATGCGGACACAGTGAAGCACAGTGTCTATGCGGATGAGGAAGATCACAAGGCTTTCACAAGACCTCCCAACATGGCCTGGGTGCAGTATGCCTTCAGCGAGGACGGTCTGTGGCATTCGCATCAAGGGCTCTCATGCCTACTGAATCCCGTTATGCTCAGATTGAAAAAGAAATGCTGGCACTCGTGTTTGCGACAAAAAAATTCCATGATTTTATCTACGGACGGCCAGTCACTGTAGAAATTGATCATCAGCCCTTGATAACCATATTAAAGAAGCCACACCACACAGACTCACCCCGCTTACAGGGTATGATGATGAAACTGCACCGCTACCACCTAGATGTGATCTTCAAATGTGGTAAGAAGCTGTTTGTGGCTGATGCATTGTCCTGGGCCCACCTTTCCACATCTGAGCCACAACTCACTGATGACCTGCTGGAAGTCATGACTATCCAGGTACTCTCTTCTCGTCGCATAGAGGAACTAAGGGCTGCTGTGCAAAGAGATGTCACATGCCAACAGCTCTCTGATATGATCAGGAAGGGTTGGCCAGCTACCTCAAAAGAACTTCCATACTGCTTGTGTCCTTTCTTCTCAATGAGAGATGAGCTGACCATTCAGGATGATTTGCTGCTTTGTGGGGAAAGATTTATCATCCCATCCGCACTGCAAAAGTTCTATGTTGCTCAGCTACATCAGGGCCATCCCGGCATCACAGCAACTAAACGCAGAGCAAAGGAAACAATGTACTGGCCATCAATGTACAGTGATATCGACACTGAAATCTCTCGCTGTGCATCCTGCAACGCACTCAGTTTTCAGATTTTGCGCACACATGGGACTTTAAGCACATTCGCAGCAGCCCTTGCTATCCTCAGTCCAATGGGCTGGCTGAGCGGGCAGTCAGATCTGCCATGCACCTTCTGGAAAAATGCTACCATGACAATACTGACATCCATGCTGCCCTTCTTCATCTTCGGAATCTTCCCCGGGATGCCTTACCTTCCCCTGCACAAAGACTGCTTTCCAGGCAAACAAGGACCTTCCTCCCAGTGACGAAGCCCATGCTTCACCCTGTTGTCCAAACTAACGTAAAAGAAACACTCACAAAACAAAGAATGAGGGGGAAAGACTATTATGACAGAAATGCACATCAGCTCCCTGCTCTGAAGCTGGGGCAAACTGTCAGGATGCAAACAGCACATGGTTTTGAGCAACCAAATAGCCCATGTAACAGCCTCAGTCCCCTAAAGTGGCACTGACACAGACAACAAGTGTTCACTGGTGACTCGTTCTGGAAGAGTCAGCCGCCCTAACCAACATTACAAAGACTATGTTTTGACCTGATTGATATGTGTTATGCAAATCTAGTTCATTATCATTCTTGTTCAAGCATTATGTAATTTTGCTACGGAAACATTCCCCTTATTGCACTTATTCTTTGTTATCAGATGTCTTGTTGTTGATTGTATTTAACGTTGCTATTTTCTCACTAGATTGTCTCCCTCTGGAAGAAGGGGGATGTAGCATTATGTGTGGTTTCACTTTAAGTCACGGCCTCATGTGAATGACGTCATTAGGCATGGCTGGGATATAGAGGCGTGTGTAATAAA

Function

NR:

description
Transposon Ty3-G Gag-Pol polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_10571262_10572444.mRNA True 2905 mRNA 0.43 2 10570705 10573868

Neighbor

gene id symbol gene type direction distance location
CI01000016_10443526_10488009 NA coding downstream 82519 10442845 ~ 10488186 (-)
CI01000016_10386099_10386648 NA coding downstream 183223 10385825 ~ 10387482 (-)
CI01000016_10228314_10299064 ULK4 coding downstream 271641 10228314 ~ 10299064 (-)
CI01000016_10089136_10135299 NA coding downstream 435406 10088716 ~ 10135299 (-)
CI01000016_10025722_10027148 NA coding downstream 543446 10025502 ~ 10027259 (-)
CI01000016_10600154_10633808 TRIM71 coding upstream 25334 10599202 ~ 10633808 (-)
CI01000016_10637748_10650217 TCAIM coding upstream 63771 10637639 ~ 10650217 (-)
CI01000016_10740961_10745890 ABHD5A, ABHD5 coding upstream 166078 10739946 ~ 10745890 (-)
CI01000016_10799559_10842613 SNRK, SNRKA coding upstream 225317 10799185 ~ 10843409 (-)
CI01000016_10897488_10911334 NA coding upstream 322318 10896186 ~ 10911334 (-)
G100351 NA non-coding downstream 19281 10529416 ~ 10551424 (-)
G100379 NA non-coding downstream 91853 10476982 ~ 10478852 (-)
G100378 NA non-coding downstream 94570 10475251 ~ 10476135 (-)
G100324 NA non-coding downstream 218575 10333883 ~ 10352130 (-)
G100302 NA non-coding downstream 283214 10287251 ~ 10287491 (-)
G100413 NA non-coding upstream 78875 10652743 ~ 10715678 (-)
G100352 NA non-coding upstream 91561 10665429 ~ 10681706 (-)
G100350 NA non-coding upstream 162680 10736548 ~ 10736879 (-)
G100346 NA non-coding upstream 163085 10736953 ~ 10737372 (-)
G100358 NA non-coding upstream 172981 10746849 ~ 10749597 (-)
G100190 NA other downstream 518316 10051168 ~ 10052389 (-)
G99178 NA other downstream 755750 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 1058277 9509622 ~ 9512428 (-)
G98691 NA other downstream 1313094 9256102 ~ 9257611 (-)
G98679 NA other downstream 1330776 9234996 ~ 9239929 (-)

Expression


Co-expression Network