RNA id: TU114110


Basic Information

Item Value
RNA id TU114110
length 485
lncRNA type intronic
GC content 0.41
exon number 1
gene id G100283
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10231662 ~ 10232146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAGTGGCGCGGCCGCGCTTTCCACACGTTTTTAGACACGACATGTGAATGGCCCAAACACAGTGCATTCCTTCAGATTAATACCGTGTTGAAGCAAAAGTCAGTGCCGATTGTAATGAACTGCGTATGTGCGCGATGCGATAAGGTCCTTGTCGCAGGTCCTAGCAGATAGATACAACTGTAAAATGCTCACTGCTGTTCACCGTGCGAGAATGACTGAAAAAAAAGTCAGGAATCGATAAACAGAATTGAAATGCGCGCATCGTATCGAATACCCGGTTACTCGAATACTTTGAAATTTGGAACCGGTTCTCGATACCCAACCCTAGTCCCAAATGAGAGTACACTTCAAAGTAGTACTGTCACTTTTAATACTTTTTATATGGTATAAATTGTTTTAGCGGTCAGGAATAATGTGCATTTAAAGCAAAAGTTTTAGTGAAACCAACATTAAAATGGTTGGAAAACCACTTTTTACTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114105 lncRNA downstream 33628 10197718 ~ 10198034 (-) True G100278
TU114082 lncRNA downstream 95588 10135848 ~ 10136074 (-) True G100256
TU114081 lncRNA downstream 98407 10132995 ~ 10133255 (-) True G100255
TU114074 lncRNA downstream 115091 10116322 ~ 10116571 (-) True G100249
TU114071 lncRNA downstream 116071 10115332 ~ 10115591 (-) True G100247
TU114113 lncRNA upstream 8155 10240301 ~ 10240525 (-) True G100286
TU114114 lncRNA upstream 9040 10241186 ~ 10241465 (-) True G100287
TU114116 lncRNA upstream 15245 10247391 ~ 10247614 (-) True G100289
TU114117 lncRNA upstream 15939 10248085 ~ 10248298 (-) True G100290
TU114122 lncRNA upstream 30735 10262881 ~ 10263204 (-) True G100295
CI01000016_10089136_10135299.mRNA mRNA downstream 96363 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10025722_10027148.mRNA mRNA downstream 204403 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_09959197_09962175.mRNA mRNA downstream 268477 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 484986 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 570465 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_10386099_10386648.mRNA mRNA upstream 153679 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 210699 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10571262_10572444.mRNA mRNA upstream 338559 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10600154_10633808.mRNA mRNA upstream 367056 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
CI01000016_10637748_10650217.mRNA mRNA upstream 405493 10637639 ~ 10650217 (-) True CI01000016_10637748_10650217
TU114011 other downstream 179273 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 416707 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 719234 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 719300 9511357 ~ 9511415 (-) False G98896

Expression Profile