RNA id: CI01000018_04336914_04342114.mRNA


Basic Information

Item Value
RNA id CI01000018_04336914_04342114.mRNA
length 1591
RNA type mRNA
GC content 0.49
exon number 4
gene id CI01000018_04336914_04342114
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4336589 ~ 4342114 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGAAGAGATCCCGTCGAACACTAGATCAGGATGACCCTCTGTGCTGTTGTGAGTACATTGATCGTCATGGCGGGCGTAGTCACATGGCAGCATGTTGCTGTGACTGTGAGGACTTGGATGATGCTTGTGACAGATGGATGAAGAAGGCGCCTCAAAATCCAGACTCCATATCTCGGGTAGTCGCCACGATCAGTGATCGTCTGCGGGTGCCCTGGATATATGGTGCCCAACAAGTTGATCTATCATTGATCCCTCCTCTTATTCTGCTTCCTGTTTTTTTGCACATTGCAGCCTTGCACTACTTGCTGGGTATTTTAGTGCTAACAGCATTGCCCATCATGGTTCTTTGGTACTACTACTTCACTCATCGAAAGAAAGGACGCACTTTATTCTTCCTCAGCCTTGCCCTCTTCTCCCTCTTCTACATGTTCTACCTCTTCATCACCGAAGTCGTCCCTCGTGGTGATGTGAATCATTTTCAGTTGGGAGCTGTGATGGCGGGTGTTGCTCTTACGGTCATTTCTCTCATAATCACCAAGAGGGGGCCGGGTTACGTCAGGCCTCGTCCATCTGACACTCATAGTACAGTGACCTATCACAAGCCACCACCTGATGTAGATGCCGCCTATCTAAATGGAGAACGGCACCAGGTGGTGATAGCCAATCAAGCCAGTCCTCCTGAACAAATTAGTGAATCTGGGACAGCACAGGAGAGTGTTCAGAGGACGAATTGGTGTACAGTATGCAAAGTGGCGCGTCCCCCGAGAGCCGGACACTGCAGGATCTGTGGAGTCTGCATCCTGCGTCTGGACCATCACTGTGTCTGGATCAACAGCTGTGTGGGACAAGCCAATCACCTCAGTTTCCTTCTGACGCTTGTTTTCTTTCTGCTGACGTCGCTGTACGGGATCAGTTTGGTGCTGCGCAGCGTGTGTCCCCATCAGAGTGTGATGACTGCACTGCTCTACTGTCCTGACGTCTACAAGCAGTACAGTTCTGCTCTGTGTTTCACCTGTGCCTGGTACAGCAGTATCGTGACAGGAGGTTTGCTGCACCTGCTGATCTTACAGCTTATCAACGTCAGCTTCAACGTGACCGAACGCGAGGCACGCCTGGCTCTGAGAGAGAAAACCGGTCGCAGCCGTCTCTGGGGTCTCATCGTCGACACTGGTGTTTACTCCCGAGGTTTCCGTAGTAATTGGACTGAATTCTTGACCATGAGCAAGGAGTCATCAAACCATAAACCATCAGATCTGGTGTAGACACTAAACTGGCAGTGTCTGCTGATGGAAAGGTCTGACTTTAAAGTGAATTATCACTCATACACTACAGTGAAGTATAATGTTGTGCTACTTAATGCCTTCAACATCCATTCCGGAGTCAGTTTTATGGCTCCAAACATTGCGGTCAAGGCCTCATCAAGAGTCAGTTGAATGTTGTGGATCAGTAGATGGCAGTGTTGTAGTATATTGCATCTCTACCAGTGTAATTCAACATCGAGTGCATCATTACTCAGGATGATTTGCGGTGGATAGTGATTACACATGACTTGACATAGATATTATGTTCTCCCTACATACTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119664 lncRNA downstream 50597 4285739 ~ 4285992 (-) True G105277
TU119556 lncRNA downstream 98454 4234605 ~ 4238135 (-) False G105185
TU119557 lncRNA downstream 98454 4234605 ~ 4238135 (-) True G105185
TU119641 lncRNA downstream 117680 4218678 ~ 4218909 (-) True G105263
TU119639 lncRNA downstream 125331 4210897 ~ 4211258 (-) True G105261
TU119691 lncRNA upstream 90077 4432191 ~ 4432482 (-) True G105304
TU119693 lncRNA upstream 102688 4444802 ~ 4445367 (-) True G105306
TU119696 lncRNA upstream 112147 4454261 ~ 4454478 (-) True G105307
TU119591 lncRNA upstream 242514 4584628 ~ 4587775 (-) True G105213
TU119575 lncRNA upstream 270583 4612697 ~ 4615380 (-) False G105199
CI01000018_04307560_04321214.mRNA mRNA downstream 14303 4306921 ~ 4322286 (-) True CI01000018_04307560_04321214
CI01000018_04248388_04258010.mRNA mRNA downstream 78551 4248122 ~ 4258038 (-) True CI01000018_04248388_04258010
CI01000018_04239141_04241413.mRNA mRNA downstream 95176 4238253 ~ 4241413 (-) True CI01000018_04239141_04241413
CI01000018_04231186_04233076.mRNA mRNA downstream 103513 4230919 ~ 4233076 (-) True CI01000018_04231186_04233076
CI01000018_04221457_04229417.mRNA mRNA downstream 107172 4221236 ~ 4229417 (-) True CI01000018_04221457_04229417
CI01000018_04344907_04359005.mRNA mRNA upstream 1977 4344091 ~ 4359005 (-) True CI01000018_04344907_04359005
CI01000018_04361150_04364887.mRNA mRNA upstream 18505 4360619 ~ 4364887 (-) True CI01000018_04361150_04364887
CI01000018_04397198_04411105.mRNA mRNA upstream 54535 4396649 ~ 4411105 (-) True CI01000018_04397198_04411105
CI01000018_04464837_04473051.mRNA mRNA upstream 122524 4464638 ~ 4473051 (-) True CI01000018_04464837_04473051
CI01000018_04491510_04539751.mRNA mRNA upstream 149121 4491235 ~ 4539751 (-) True CI01000018_04491510_04539751
TU119577 other downstream 90579 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 318772 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 326014 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 836075 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 1935686 2386208 ~ 2400903 (-) True G103873
TU119553 other upstream 512967 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1549222 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1615492 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 2188333 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 2298498 6641872 ~ 6641956 (-) True G106487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046312 True 1697 mRNA 0.49 5 NC_007135.7 21122836 ~ 21131607 (-)