RNA id: CI01000018_04361150_04364887.mRNA


Basic Information

Item Value
RNA id CI01000018_04361150_04364887.mRNA
length 2138
RNA type mRNA
GC content 0.46
exon number 12
gene id CI01000018_04361150_04364887
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4360619 ~ 4364887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAACCTCTCTCTGTGGAGTTAGGACCAGGAATCATGGGCTCAATCTTTGATGGTATTCAGCGTCCCCTCAAAGACATCAATGACCTCACTCAAAGTATCTACATTCCCAGAGGAGTCAACATTGGTGCCCTTAACCGTGATCTGAAATGGGAGTTCACTCCATCCAAGAGCTTGCGTGTTGGCAGTCACATAACAGGAGGTGATATCTATGGTATGGTGTTTGAAAACTCTCTCATTAAACACAAAATAATGTTACCGCCGAAAAGCAGAGGAACTGTCTCTTATGTGGCTCCACCTGGAAACTATGATGTCTCGGATGTGGTGTTGGAGTTGGAGTTTGAGGGGGTGAAAGAGAAGTTCACCATGGTGCAGGTGTGGCCCGTGCGTCAGGTCAGGCCTGTCACTGAGAAGCTCCCTGCGAATCACCCTCTGCTGACTGGTCAGCGAGTTTTGGATGCCCTTTTTCCGTGTGTGCAGGGAGGAACCACAGCCATCCCTGGTGCTTTCGGTTGTGGTAAAACTGTGATCTCTCAGTCCCTGTCTAAGTACTCCAACAGTGATGTCATCATCTACGTGGGCTGCGGAGAACGTGGTAATGAAATGTCTGAAGTACTCCGAGATTTCCCTGAGCTGACCATGGAGGTGGATGGTAAGGTGGAGAGCATCATGAAGAGAACGGGCTTGGTTGCCAACACATCCAACATGCCCGTGGCTGCCAGAGAAGCTTCTATTTACACAGGAATCACTCTGTCTGAGTATTTCAGAGACATGGGCTACAATGTGAGCATGATGGCTGACTCCACCTCTCGATGGGCAGAGGCTCTGAGGGAGATCTCTGGTCGTCTGGCTGAGATGCCTGCTGATAGCGGTTATCCTGCCTATCTCGGAGCACGTCTGGCCTCATTTTATGAGCGTGCCGGCCGAGTTAAATGTCTTGGTAACCCAGAGAGAGAGGGCAGTGTGAGCATTGTGGGAGCTGTGTCTCCCCCTGGTGGAGATTTCTCAGATCCTGTGACTTCTGCTACGCTTGGTATTGTACAAGTGTTTTGGGGTCTGGATAAAAAACTGGCTCAGAGAAAGCACTTCCCCTCAGTGAACTGGCTCATTAGTTACAGTAAGTACACAAGAGCTCTGGACGAGTACTACGACAAGCACTTCCCTGAATTTGTGCCACTGCGTACCAAAGCCAAAGAGATCCTGCAAGAAGAAGAGGACTTGGCTGAGATTGTGCAGCTTGTGGGGAAGGCATCATTGGCTGAAACGGATAAGATCACACTGGAAGTTGCCAAATTGATCAAGGATGATTTCCTGCAGCAAAATGGATACACGCCTTACGACAGGTTCTGTCCGTTTTATAAGACAGTGGGTATCTTGTCCAACATGATTGCGTTCTATGATATGGCACGTCATGCCGTAGAGACCACTGCACAGAGCGACAATAAGATCACCTGGTCCATGATCCGGGAGCACATGGGAGAAATTCTCTACAGGATCAGTTCCATGAAATTTAAGGACCCTGTGAAAGAGGGTGAGGAGAAGATCAAAGCTGAGTATGCCCAGCTCCATGAAGACATGCAGAACTCCTTCCGCACACTGGAAGAATAAGAGTCTTGTCCTAGCCATCTTTCTCAGGGCAGGGCAGCAGAAACCACCAGTCCCCCCACCCCATACTCCCAACGCACCCACAGTCAGAGTCTCTTTTCTCTGTCTAATACATTCCACTGCTTTATGTTCATCTTGTGGTGTGATAGATGCTCTAGTGTTCTTTAGGTGTTTCCTAATACCTTTGTTTGTGTGTGCATTTGTGTATGTGCAAACTGTATTTTCCTCTTCACATCCTCTGCTCTGCCCCAGGTCTTCTTTATATTTATCATCCTCTCCATAGATATAGATGTTATTAAATAATTTGATGTAATTATTGTTCTATTCTATTTTTATCTGTACAGAAGATTGAAAGACATGACTTCAGAGGTTCACTATATTTACAGCTGGTATATTTACAGTTTTAATGGTTTACAAAATTTGGTATGGCTGTTTATTGCAGTATTGTCCTGTATATTTCTTTGAGGATGCAGTACACTTCCTCTTCATTGCTCACATGAAAATGTGTTTGAGTCCTGGAAGAATATAAATAAA

Function

GO:      GO:0016820, GO:0015992, GO:0015991, GO:0016324, GO:0006874, GO:0006883, GO:0033178, GO:0033180, GO:0046961, GO:0046034, GO:0015078, GO:0005524

KEGG:

id description
K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119664 lncRNA downstream 74627 4285739 ~ 4285992 (-) True G105277
TU119556 lncRNA downstream 122484 4234605 ~ 4238135 (-) False G105185
TU119557 lncRNA downstream 122484 4234605 ~ 4238135 (-) True G105185
TU119641 lncRNA downstream 141710 4218678 ~ 4218909 (-) True G105263
TU119639 lncRNA downstream 149361 4210897 ~ 4211258 (-) True G105261
TU119691 lncRNA upstream 67304 4432191 ~ 4432482 (-) True G105304
TU119693 lncRNA upstream 79915 4444802 ~ 4445367 (-) True G105306
TU119696 lncRNA upstream 89374 4454261 ~ 4454478 (-) True G105307
TU119591 lncRNA upstream 219741 4584628 ~ 4587775 (-) True G105213
TU119575 lncRNA upstream 247810 4612697 ~ 4615380 (-) False G105199
CI01000018_04344907_04359005.mRNA mRNA downstream 1614 4344091 ~ 4359005 (-) True CI01000018_04344907_04359005
CI01000018_04336914_04342114.mRNA mRNA downstream 18505 4336589 ~ 4342114 (-) True CI01000018_04336914_04342114
CI01000018_04307560_04321214.mRNA mRNA downstream 38333 4306921 ~ 4322286 (-) True CI01000018_04307560_04321214
CI01000018_04248388_04258010.mRNA mRNA downstream 102581 4248122 ~ 4258038 (-) True CI01000018_04248388_04258010
CI01000018_04239141_04241413.mRNA mRNA downstream 119206 4238253 ~ 4241413 (-) True CI01000018_04239141_04241413
CI01000018_04397198_04411105.mRNA mRNA upstream 31762 4396649 ~ 4411105 (-) True CI01000018_04397198_04411105
CI01000018_04464837_04473051.mRNA mRNA upstream 99751 4464638 ~ 4473051 (-) True CI01000018_04464837_04473051
CI01000018_04491510_04539751.mRNA mRNA upstream 126348 4491235 ~ 4539751 (-) True CI01000018_04491510_04539751
CI01000018_04557779_04561445.mRNA mRNA upstream 192749 4557636 ~ 4561997 (-) True CI01000018_04557779_04561445
CI01000018_04595424_04596449.mRNA mRNA upstream 229578 4594465 ~ 4597587 (-) True CI01000018_04595424_04596449
TU119577 other downstream 114609 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 342802 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 350044 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 860105 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 1959716 2386208 ~ 2400903 (-) True G103873
TU119553 other upstream 490194 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1526449 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1592719 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 2165560 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 2275725 6641872 ~ 6641956 (-) True G106487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046317 True 2555 mRNA 0.47 15 NC_007135.7 21154120 ~ 21172122 (-)
bowfin (Amia calva) AMCG00016521 True 6193 mRNA 0.52 18 CM030122.1 24073442 ~ 24092600 (-)