RNA id: CI01000024_00955186_00965837.mRNA


Basic Information

Item Value
RNA id CI01000024_00955186_00965837.mRNA
length 2019
RNA type mRNA
GC content 0.52
exon number 8
gene id CI01000024_00955186_00965837
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 954717 ~ 966070 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGCCTGCATAGATAAAATGCCTGCACGCAGGTGCACTTTGTACTGTTTCCTCTTGGAGCGCCGGGGGCTTGGACCCTTAGCCCCTCGCCTTTATGTCTCAGGACACCCCCTCCACCAAAGGCATCTCTCTCTTTCACTCATCTTTTCTCCCCCTCTCTTCTTCTGTGGCGAGTCTCATGAAAGCGAAGTGGTGTGTTGTCGGTGTGGTCGGCTCCCCCGGTGAGCAGGAGGAATGGCTGCGGTATTGATCGTCCGGCTCCCTGGAGCTCCCCTTTGGGGGGTGGTGGGAAGTGCAGCGCTGATAGCCCGGCGGCGAAGAGACAGAGACAGAGAGATGGAGTTTTTTTTTGGAGAGGGAAAAGACTCAGGCCTTGCCCCTTCATTCCTCCCTAGACCTGAAGAAGACCATCTGGGTCAACCTCACTCTGAGCCCCTCTCGGTGGGGCAGCACTCGACCAATCGCACAACATGGGCATGGGACCTGCGACCGGTCGGGTCAGCAGAAGCTCTCAGACAGCTCTGTGCCCGCAGGCAGGCTGAGCTTCTTACGCCCCGCCGCCAGAGCTGTTTAAACAGCCCGAATGATTTACATGCCGGCTTGGATCAGCACAGGGAAGCTGGGAAAATTTTAAAAGACCAGGATGAATTGCTTGTATTGAGGGGGCAAGATATTGAGCGAGAAGGTTGGGGAGGGCCGGTAGCAGAGCGAGCGTGCCGTCCGCCGCCGGGCCCTGCCGGGGCTGCGCGCCTGTTTTACGGCTCCCCAGCGGCAGGGCTGCGGCAGCTTCGTGCATGGCTGAAGAAATGGGCTGCCGCCGCACCTGCCGTTTTTCATCCTTTGCGGAAATTTATGAAAAGCATTACATTTTCCTCGCTGCATAAAATCCATGGGATGGGGTCTCTAAAGGAATCAGAGCCGGGAAACAAAAGACAAATTGGATTTGCGTATGTGGACTCTGACCTGGGGATGGGAGGGATGGGAGAAAAAAACCTTCCATGCCTTCTAGTCCTCCTGCTTTCTATTGCCAGTGTTCTTTGGGGAGTGTTTGATACAATTGTACAAAGCTTGTCTGCTGGAATACGATCTGGACTAATGAGACATAATCTAATTGAGCTTTTATCTATTGTAACAGACCGACAGAGGTGGTTATCGACGCCGATCATTCCCAGCGGCAGTCCCCTGCTGGGAGAGAGGGAGAGAGGCAGAGAGGCAGTGGCACATGGCCAGGGGAGGATGTATGCGCATGGCTCAGAGGAAGCAGTAAGAAAAAAAATCAATATTGCTCCACCGAGCATGTGTAATACCTCAAATGAAAGAATTCCTGAGCTCTCTTTCATAGATGGAGCACAGTCACTGCCCCGGGCCTGGGTTATCATCAACTGCAGGACTGTGCCCAGCTGTCTCTACGCTCCAAAGTTGCGGGTCAGTATTTGGCGAGAGCTCATCGGTATAGAGAGCGCAGCCTCTTTCAGGGCAGATAGGCTAAAGATCACATCTGTGACCTTTGACATTTGCCTCTCAAATCATCCTTCTGACCTAAACCTCTGAAACAAGAAAGGAGGAAGAAGATGTGTGTTAGAGAAAGATCGCGAGAGGACGAGACGCGGTCACCCGTGTTATGTCAATAGCGCTCTGGTGGCGGAGTGGTGTAAATTGATCTTTTACAGTTTGTGGAGGTGACGGTGCCTGTAGGAAGGCAGATAAATCAGGCAACCTGGGGCTTAGAACATTGATTGGTAGGACCTGTGACAGAGTGAAGGAGAAAGAGAGAGACGGAGAGAAAAAGAGGCTTCCAGCTCAGGCCCTGTGGGACGGGTGGGCTTGAACAGGAGCTTACATGTTACACCTCAGAGGGGGAGAGATGAACTCATAAGGCCTACTCAAGCGTTAAACAGAAGCCAGTCCTGGTTTATTTTTGTGTATGTTAATTTGTTTTGTGTGTGTGTGTGTATGTGTGCTGAATAGGCATATATTTTCTAAAGTATGATTGTACTGGTTTGGTGTTTTCAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137896 lncRNA downstream 48773 874427 ~ 905944 (-) True G121423
TU137888 lncRNA downstream 106255 845994 ~ 848462 (-) True G121415
TU137884 lncRNA downstream 112698 838695 ~ 842019 (-) True G121412
TU137871 lncRNA downstream 296970 657431 ~ 657747 (-) True G121399
TU137870 lncRNA downstream 298107 656400 ~ 656610 (-) True G121398
TU139514 lncRNA upstream 415358 1381428 ~ 1385325 (-) True G122859
TU139518 lncRNA upstream 478516 1444586 ~ 1452856 (-) False G122860
TU139516 lncRNA upstream 485454 1451524 ~ 1452856 (-) True G122860
TU139582 lncRNA upstream 525781 1491851 ~ 1492211 (-) True G122923
TU139585 lncRNA upstream 535505 1501575 ~ 1505218 (-) True G122926
CI01000024_00931895_00936667.mRNA mRNA downstream 17886 931742 ~ 936831 (-) True CI01000024_00931895_00936667
CI01000024_00913269_00915063.mRNA mRNA downstream 39152 912852 ~ 915565 (-) True CI01000024_00913269_00915063
CI01000024_00871953_00893156.mRNA mRNA downstream 61561 871689 ~ 893156 (-) True CI01000024_00871953_00893156
CI01000024_00825386_00837898.mRNA mRNA downstream 116167 824968 ~ 838550 (-) False CI01000024_00825386_00837898
CI01000024_00766380_00783144.mRNA mRNA downstream 170461 765081 ~ 784256 (-) True CI01000024_00766380_00783144
CI01000024_01258292_01261764.mRNA mRNA upstream 291209 1257279 ~ 1262033 (-) True CI01000024_01258292_01261764
CI01000024_01405425_01412752.mRNA mRNA upstream 439005 1405075 ~ 1412752 (-) True CI01000024_01405425_01412752
CI01000024_01423879_01438170.mRNA mRNA upstream 457621 1423691 ~ 1438170 (-) True CI01000024_01423879_01438170
CI01000024_01455583_01465466.mRNA mRNA upstream 489325 1455395 ~ 1465577 (-) True CI01000024_01455583_01465466
CI01000024_01517836_01518771.mRNA mRNA upstream 550449 1516519 ~ 1519206 (-) True CI01000024_01517836_01518771
TU137850 other downstream 127866 823733 ~ 826851 (-) True G121380
TU139935 other upstream 1581390 2547460 ~ 2555036 (-) True G123233
TU140468 other upstream 2969972 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 6391167 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 6391635 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 6391684 7357754 ~ 7358104 (-) True G125457

Expression Profile