RNA id: CI01000024_05986174_06002425.mRNA



Basic Information


Item Value
RNA id CI01000024_05986174_06002425.mRNA
length 1612
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000024_05986174_06002425
representative True

Chromosome Information


Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 5985732 ~ 6002809 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATAATTACATCTATGGAATCACGCTAATAGCATATCAACAGCCAAGCCAAATGATTTCTGCTCTATATTTGTTTCATATAAAGTCTTTTTAGGAAAAGGATATACAACACAATAAAATGTAGGATGGAGCTTTAAGTTTCTCAAAGTGTTTACTATCTCTCAGTCATTGTGGAGATGATTCCACTAACCATCAATTATTTATTTGTTCATTTATTTCAAGGGGATCATGTTAATATTTGTTCCAACCAATGTGTAGACACTAGATGAGGTATATATGAGCACTTCTGGACACTAGAGTTAATATGAAATGTCATTTGCAACCCATTTTACTTCTATTATGTGACATTTTTCCAAGTGGAACAGGTAATTCAAGGAGAAGAAATCATGTGGAATTGCCAAATCAGACACTCTCAGAATGAGTGGAAAAGGAAGAGAGGCAAGGGCACTTTCACGTTTTGGACTTGTGGAGATGTAGCTGTCACACTTTCAAAGGGAGGCAGGCAAAGCAGGGAGGAGCCTAAGCGTGTACGGCTATGTCCTTTGTGGGAATTTTCTCAGATCCATGAAAAGACTGCACGCTCCTGTCGGAACGCAGATCCGGCTGAGAAGAGATCTGTGAGGTTTAGCTTGCTCTGTGAGCTGTCAATCATCCAATGTTTAAACAACAATAATTTTGGCTCAAATCCCCTCTCAAATGACTTCAGCTACAACACAAATAACATTAGCAAACTGAAAGTCAAGAGGCTCTGCTGGATAATGAATCCAATCTTCACCCAAAATGAGTGCAGCGGTTCCGCAGTGGTTGTACATCCGGACGGAATGCCGCATCATGACAGCTCTTACTCCATGTTTGATCACAAATTTGTAGGCAGCGAGAGACAGAGAATGTGGGGGAGAGCTGATGCAAGCGGCCTCATGCAAATTACAGGCGGGCGTTTTGGAGGTTACTACAGAGAGGGTTTGGTCGTCGCCGCACACTGTGAAGTTATCGGAAAAGACTGGCGGCACATGCGGTGTAGTATTTATCCACTCGGTTTCCTCTGCGGCCCTCCTGTAGATTTGATCAATCCTGGCCCTCCGAGCAGCTGCGGAGGGTCTCGAGGCCATCCTGTTTGGGAGAAGGGCATGAAACAACAAATAAAACGAGTACACTCAAATCTCGCTATCTAAATAATAACCGGCTAAGCGCCTGCGTGATCCGTGCTGCATAATCGTGATTAAACAATAAGGGAATATTAGAAAATCTCTAAAGGGAAAAGAATGCCTAATTCATTCGGATTTAAACGTGGAAGATAATCTGAGCACGTTTAACCTCTCGCCGTCATAAACCCGCAACATCTGTGCGGGAGATCTTATTATGATGAATTACACATTATTACGTTTGAGCCAAAGATATGTTAGCAAAATAAGCCGTGGCCCAGATTCTCTGCAACGTTCCCAAACAAAGCGTCGGATTCAGTGTCATGATATTCAGTGCCAAGTCTCTACATAACATATCTTGAGGCATAAATGTGTAGAGTGTAGTTTTGTTTTTCTTTTCTTCTTTTTATTTCCATACCGTTGCCATAGTAGATCTCATTGTCTATTTTCTCTCTCTCTATAAATGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141365 lncRNA downstream 70417 5914661 ~ 5915315 (-) True G124494
TU141177 lncRNA downstream 197218 5788258 ~ 5788514 (-) True G124318
TU141170 lncRNA downstream 206213 5779274 ~ 5779519 (-) True G124311
TU141168 lncRNA downstream 209850 5775674 ~ 5775882 (-) True G124309
TU141031 lncRNA downstream 380161 5605079 ~ 5605571 (-) True G124196
TU141455 lncRNA upstream 21551 6024360 ~ 6024720 (-) True G124581
TU141510 lncRNA upstream 146979 6149788 ~ 6150043 (-) True G124636
TU141521 lncRNA upstream 169545 6172354 ~ 6172632 (-) True G124647
TU141522 lncRNA upstream 172485 6175294 ~ 6175514 (-) True G124648
TU141523 lncRNA upstream 173828 6176637 ~ 6176866 (-) True G124649
CI01000024_05879244_05880952.mRNA mRNA downstream 104418 5878709 ~ 5881314 (-) True CI01000024_05879244_05880952
CI01000024_05749044_05807817.mRNA mRNA downstream 177651 5748897 ~ 5808081 (-) True CI01000024_05749044_05807817
CI01000024_05422777_05445492.mRNA mRNA downstream 540240 5422777 ~ 5445492 (-) True CI01000024_05422777_05445492
CI01000024_05323160_05334951.mRNA mRNA downstream 650781 5323121 ~ 5334951 (-) False CI01000024_05323160_05334951
CI01000024_05317964_05322464.mRNA mRNA downstream 663268 5317388 ~ 5322464 (-) True CI01000024_05317964_05322464
CI01000024_06451305_06495178.mRNA mRNA upstream 448303 6451112 ~ 6498430 (-) False CI01000024_06451305_06495178
CI01000024_06867041_06878399.mRNA mRNA upstream 864232 6867041 ~ 6878813 (-) True CI01000024_06867041_06878399
CI01000024_06889558_06901776.mRNA mRNA upstream 886638 6889447 ~ 6902501 (-) True CI01000024_06889558_06901776
CI01000024_06909681_06921880.mRNA mRNA upstream 906513 6909322 ~ 6921880 (-) True CI01000024_06909681_06921880
CI01000024_06944906_06955771.mRNA mRNA upstream 941153 6943962 ~ 6955771 (-) True CI01000024_06944906_06955771
TU140468 other downstream 2043808 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 3430696 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 5158881 823733 ~ 826851 (-) True G121380
TU142441 other upstream 1354428 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 1354896 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 1354945 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 1972858 7975667 ~ 7976047 (-) False G125798

Expression Profile