CI01000024_05317964_05322464 (DTD1)


Basic Information

Item Value
gene id CI01000024_05317964_05322464
gene name DTD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 5317388 ~ 5322464 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_05317964_05322464.mRNA
ATGAAGGCGATCATTCAAAGAGTAACAAAGGCAAGCGTAACAGACATTGAAACCTATGCATTAGATATAAGTGTTCAGATTAGCACTGTTTTAAGGACTCGTGTTGCCTTCACTTTACTGTACGATGACGTCATTCGTGCGCTTTATGACACAGTTGGGGAGGAGCAGATCAGTTCCATAGGCAGAGGACTCTGTGTCTTACTTGGCATCTCAGTGGAGGACACACAGAAGGATGTTGACTACATGGTACGTAAGATTCTTAACTTGCGTGTGTTTGAGGATGAGAACGGCCGTGCCTGGAGCCGCAGCGTGATGGACAGAGAGCTGGAGGTGTTGTGTGTGAGTCAGTTCACTCTGCAGTGTATCCTCAAGGCAAATAAGCCTGACTTCCACTCTGCCATGCCGGCCGAACTGGCTCAGCCCTTCTACAACAGCATGCTGGAGCAGATGAGGGAAGCGTATAAACCAGAACTCATCAAAGATGGGCAGTTTGGTGCAAAAATGCAGGTACTCATTCAGAATGATGGACCTGTGACCATTCATCTGGAGTCTCCTACTCGCCCTACAGACCCTAAACAGCTGTCCAAACAAGAGAAGCAACAGCAGCGAAAAGAAAAAACCAGGACAAAAGGCCCTTCCGAGTCCAGCAGAGAGAAGGCAGCTCTGCGCTCTAAAGCAGACCCCAGCGCCAGCAGCGGAGCAGAGGGAGATGTGTCCTCTGAACGGGAACCATAGAGTACCTCACGGTAAACTATACAGCCACAGTCATACTTATGGTCTCTTATTTCTTAAACCATTTCCTCACTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTCTGTCTATCTATTATCTTCTCTTATTTCCCATAATTCAGTTGTTTTTTCTATTTTTTTTTTTTTTTTTATTGAACTGAATCAAAGTCCAGGGGCTGTTCTTTGGAGATTGACACCAAATAGCACAGTGTGCTCATTGTATTTCTTTGTTTTTTTTTAAAGATTTTACAACTTGCGGATCCAGATTTTCCAGGGGAATGCTGCTGTCTTCAGGGACATCTCTCATTGCAGCTCATGCCTCATTACTGTCCCTCTCAAATGTCCACGATAGTGCCCAGTCAGATTTTCTTCTGAAACTTGGATTGTATATACACACAAGAACAAGTGGCAGCTCCACAATTACCAGTAGAAAAAAGACTCAGGCACATATCAGTGGTATTTTGGCACTACTTTGAACATATCTGAATATTTACTAGGCCATCTAATTTATTTAAATGTATACATCTCTGTGATATGATTTAATAAA

Function

symbol description
dtd1 Enables Gly-tRNA(Ala) hydrolase activity. Predicted to be involved in tRNA metabolic process. Predicted to be active in cytoplasm. Orthologous to human DTD1 (D-aminoacyl-tRNA deacylase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_05317964_05322464.mRNA True 1311 mRNA 0.43 5 5317388 5322464

Neighbor

gene id symbol gene type direction distance location
CI01000024_05295273_05311854 NA coding downstream 5534 5295195 ~ 5311854 (-)
CI01000024_05253329_05288232 RAPGEF4 coding downstream 29156 5252438 ~ 5288232 (-)
CI01000024_05231804_05251647 NA coding downstream 65741 5231264 ~ 5251647 (-)
CI01000024_05125128_05131366 NA coding downstream 186022 5125123 ~ 5131366 (-)
CI01000024_05023856_05045877 DZIP1 coding downstream 271245 5023681 ~ 5046143 (-)
CI01000024_05323160_05334951 SEC23B coding upstream 657 5322896 ~ 5334951 (-)
CI01000024_05422777_05445492 TRAK2 coding upstream 100313 5422777 ~ 5445492 (-)
CI01000024_05749044_05807817 NA coding upstream 426433 5748897 ~ 5808081 (-)
CI01000024_05879244_05880952 NA coding upstream 556245 5878709 ~ 5881314 (-)
CI01000024_05986174_06002425 NA coding upstream 663268 5985732 ~ 6002809 (-)
G124148 NA non-coding downstream 53038 5262961 ~ 5264350 (-)
G124114 NA non-coding downstream 83195 5219369 ~ 5234193 (-)
G124120 NA non-coding downstream 102565 5212986 ~ 5214823 (-)
G124140 NA non-coding downstream 104607 5212388 ~ 5212781 (-)
G124133 NA non-coding downstream 153432 5163725 ~ 5163956 (-)
G124164 NA non-coding upstream 56265 5378729 ~ 5378939 (-)
G124219 NA non-coding upstream 128310 5450774 ~ 5455225 (-)
G124170 NA non-coding upstream 144345 5466809 ~ 5467868 (-)
G124256 NA non-coding upstream 204536 5527000 ~ 5527499 (-)
CI01000024_03938368_03941795 NA other downstream 1375464 3938315 ~ 3941924 (-)
G123233 NA other downstream 2762352 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 4490537 824968 ~ 838550 (-)
G125457 NA other upstream 2034773 7357237 ~ 7358104 (-)
G125798 NA other upstream 2653203 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031814 dtd1 coding NC_007117.7 CM002890.2 6802142 ~ 6809598 (+)