CI01000024_05231804_05251647


Basic Information

Item Value
gene id CI01000024_05231804_05251647
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 5231264 ~ 5251647 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_05231804_05251647.mRNA
ATGACTGGGATTGTTCAGAGAGCGACAGGCCAGCGCGTTTCACCGGACCGCACGGAAAACACGACTAACAGCCACAGTAAATGTCAGTATGAGATGTCGTCCCTCAGTGCTAGCTTCGTTCAGATCCGCTTCGATGACATCCGCTTTTATGAGAACTGCGGTGGTGGGAGTTTTGGGAGCGTGTATCGGGCACACTGGATCTCACAGGACAAAGAAGTGGCTGTTAAAAAACTGCTGAAAATTGATGATGAGGCTGAGATTCTGAGTGTCCTGAGCCACAAAAATATTATTCAGTTCTACGGAGCCATTCTGGAAGCACCCAACTATGGCATTGTCACAGAATATGCCAGCAGAGGATCATTGTATGAATATTTGTCCAGTGCTGACAGTGAGGAGATGGATATGGATCAAGTAATGACCTGGGCGATGGAAATTGCTAAAGGAATGCATTATTTACATGCCGAGGCCCCAGTGAAAGTCATTCATAGAGACCTGAAGTCAAGAAATGTTGTGTTAACAGCAGACAATGTATTAAAGATCTGTGATTTTGGAGCATCCAAGTTGGTCTCTCACACAACACACATGTCTCTGGTGGGCACGTTCCCTTGGATGGCCCCTGAAGTGATCCAGAGTTTACCCGTCTCAGAAACATGTGACACTTACTCATACGGCGTGGTATTGTGGGAGATGCTGACCAGAGAAGTGCCATTTAAAGGTTTTGAGGGTTTGCAGGTGGCCTGGTTGGTGGTGGAAAAACATGAGAGGCCGACAATTCCCAGCAGCTGCCCCGCCAGCTTTGCAGACCTGATGAGATGTTGCTGGACTGCAGAGCCCAAGGAAAGGCCACAGTTCAAACAGATCCTGAGCACCCTAGAGACCATGAAAAATGACAGCAAACTGCCAGACCAGTGCAACTCCTTCTTACATAACAAAGCAGAGTGGAGGTGTGAGATAGAGGAGACACTGGAACGCTTGAAGCAGCTGGAGAGGGAGTTGAGCTGTAAGGAGCAAGAGCTGGCGGAAAGAGAAAGAAGATTGACAGAGTGGGAAAACAGACTCATGGAAAGATCCCGATCCTGCACCCCTCTGTTTTCACATATTTCCCCCCTGGCGGCCACTCTCAGTGCCGAGTCCTTCTATGAGGCTCACATGGAGGAGAGCAATAGCTCGGAGGTCAGCTGTCAGATTTCATCAACCTGCAATAACGGGGATCTGGGCCAGGCCAGCCTACAGACGCTCATGCTGGGATTTGGGGGTGTGTTTGACCTGGATATGAACATTCCCAGCGGTAACCTCGTCCGCCATTCAGGGATGCAGTTGAACATGCAAGCAAAGAAGAATTCCTCCAAGTCCTGCAGTGTCCGTGAAGGACGTAAACTGAACATGGCCATCACCATGGACGACTTTGGCTGGTCTGATGACGACAGCGATTAGTGGAGTGCAGCACAGTACGACAGGGTGGGGTTAGATGGGGTCACAGCCGGTCTAAGGTCAAATATCGAGAGTCGGAGCTAGTCAAATCAATTTCCAACAGTTATAATTAGAAGTTTAAACTGTAAAGATTGATCTGAATATTTTAAAAGATTGTTGCACCCATGTGTGGTATGTTTCAGTGCAAAAAAAAAAAAAATGCGTTATTTGATCCAGAGCAGAATATTACACTGCCCTGTTAGCAGTAGGGCTGTTTTCTGAATTTACCGGCTAACCAGTACAAATACTCTTTGATAAATATCAGGCACGATGAACGATACTGCATTGTAATTGGGAAGATACAGGGTACTGCATAAATGCCCATAAATGGCAGGATTTACCATCGATAGGAGGGATTTACGTCTGCCTCCTCTGAGTGAAACACCAGATCATGCTGAGATTTCCCCTGTGAGAAATCACATTTACAATATTTATAAAGTGTGAGATTTAATGGGATTTCTGAAGTTGTGTTTTTGTAAAGCCCTGAAGTTTTTATAAAATAAA

Function

NR:

description
LOC405768 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_05231804_05251647.mRNA True 1974 mRNA 0.46 12 5231264 5251647

Neighbor

gene id symbol gene type direction distance location
CI01000024_05125128_05131366 NA coding downstream 99898 5125123 ~ 5131366 (-)
CI01000024_05023856_05045877 DZIP1 coding downstream 185121 5023681 ~ 5046143 (-)
CI01000024_04952720_04980663 ABCC4 coding downstream 250601 4952477 ~ 4980663 (-)
CI01000024_04934952_04935671 SOX21A coding downstream 295424 4934868 ~ 4935840 (-)
CI01000024_04921413_04932000 NA coding downstream 299264 4920795 ~ 4932000 (-)
CI01000024_05253329_05288232 RAPGEF4 coding upstream 791 5252438 ~ 5288232 (-)
CI01000024_05295273_05311854 NA coding upstream 43548 5295195 ~ 5311854 (-)
CI01000024_05317964_05322464 DTD1 coding upstream 65741 5317388 ~ 5322464 (-)
CI01000024_05323160_05334951 SEC23B coding upstream 71474 5322896 ~ 5334951 (-)
CI01000024_05422777_05445492 TRAK2 coding upstream 171130 5422777 ~ 5445492 (-)
G124120 NA non-coding downstream 16441 5212986 ~ 5214823 (-)
G124140 NA non-coding downstream 18483 5212388 ~ 5212781 (-)
G124133 NA non-coding downstream 67308 5163725 ~ 5163956 (-)
G124105 NA non-coding downstream 84171 5145508 ~ 5147093 (-)
G124082 NA non-coding downstream 88447 5139902 ~ 5142817 (-)
G124148 NA non-coding upstream 11314 5262961 ~ 5264350 (-)
G124164 NA non-coding upstream 127082 5378729 ~ 5378939 (-)
G124219 NA non-coding upstream 199127 5450774 ~ 5455225 (-)
G124170 NA non-coding upstream 215162 5466809 ~ 5467868 (-)
CI01000024_03938368_03941795 NA other downstream 1289340 3938315 ~ 3941924 (-)
G123233 NA other downstream 2676228 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 4404413 824968 ~ 838550 (-)
G125457 NA other upstream 2105590 7357237 ~ 7358104 (-)
G125798 NA other upstream 2724020 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031818 zak coding NC_007117.7 CM002890.2 6924637 ~ 6967588 (+)