CI01000024_04934952_04935671 (SOX21A)


Basic Information

Item Value
gene id CI01000024_04934952_04935671
gene name SOX21A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4934868 ~ 4935840 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_04934952_04935671.mRNA
ACTGATACTTGACAAATAGTAAAACTTATTTCTAGGCGGAGACTAGATTTTGGTGCCATGTTACAAAGGTAACATAGCCAGGTCTGACTGAACTGTGCGTGAAAGGAACTTTGGGCTGCTTTCCGTTGGACTGCATTGAAAAAGGAGCACCAGAGAAACTGTTTCAGAAATGGCAAAGCCTATGGACCATGTTAAGCGTCCTATGAACGCTTTTATGGTGTGGTCGAGAGCCCAGAGACGGAAGATGGCACTGGACAACCCGAAGATGCACAACTCTGAGATCAGCAAACGCCTCGGAGGCGAATGGAAGCTCTTGTCAGACTCTGAAAAAAGACCTTTTATCGACGAAGCCAAACGACTTAGAGCCGTTCACATGAAAGAACACCCGGATTACAAATACAGACCGCGCCGAAAGCCCAAAACCTTGATCAAAAAAGACAGGTATCATTTTAATGTGACGTATAATCTAGGTGACAGCGACCCGTTGAAAAGTGCGCGGTTACCTGGTGACGCGCTCACGGACACGCTGAGCGCGGAGAAAACGTCTGTTGCTGCTGCTACTCGGGTGTTTTTCAGTCACCACCACCTGTCCGCCAACCCCTATCCGTTTCTCGACCTGTCCTCCAAAATGACGGAATTACCCCCTGCACCTTTCCCACATTATTCTTTGCTCGGGTATCCCGGTGGAGTCTCCGCGTTTCCCGGCATGGGTGTTCTGGCCGGTGCGCCACACGCTCATCCGTCTCCGGGTAACCCGGGCCACATGGTGCCCTATAACTGCCTGGGCTGGCCGGGTTCTGGACCTGCTGTTCCTTCGTCTTACGTGCTTTTACCAGGAATGACCAAAGCTCAGCATGAACCTTACCTCACTTATGCCGCAACGATATGACTGGAAATTAAAGAACCACAATGTTCATGTGGTATAAGGTCACGTGCACTTGTTTAAAGTTTTGCCTTTGTAAAAAGAAATAAA

Function

symbol description
sox21a Enables DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within dorsal/ventral pattern formation and response to steroid hormone. Predicted to be located in nucleus. Is expressed in several structures, including hindbrain neural plate; nervous system; neural rod; neural tube; and pleuroperitoneal region. Orthologous to human SOX21 (SRY-box transcription factor 21).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_04934952_04935671.mRNA True 973 mRNA 0.49 1 4934868 4935840

Neighbor

gene id symbol gene type direction distance location
CI01000024_04921413_04932000 NA coding downstream 2868 4920795 ~ 4932000 (-)
CI01000024_04900693_04903891 ARF2B, ARF3A, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 30902 4899850 ~ 4903966 (-)
CI01000024_04890922_04892119 NA coding downstream 42714 4890776 ~ 4892154 (-)
CI01000024_04860251_04882047 ERBB3A coding downstream 52064 4860102 ~ 4882804 (-)
CI01000024_04849096_04855992 NA coding downstream 78559 4848825 ~ 4856309 (-)
CI01000024_04952720_04980663 ABCC4 coding upstream 16637 4952477 ~ 4980663 (-)
CI01000024_05023856_05045877 DZIP1 coding upstream 87841 5023681 ~ 5046143 (-)
CI01000024_05125128_05131366 NA coding upstream 189283 5125123 ~ 5131366 (-)
CI01000024_05231804_05251647 NA coding upstream 295424 5231264 ~ 5251647 (-)
CI01000024_05253329_05288232 RAPGEF4 coding upstream 316598 5252438 ~ 5288232 (-)
G123748 NA non-coding downstream 15816 4914340 ~ 4919052 (-)
G124044 NA non-coding downstream 23925 4910730 ~ 4910943 (-)
G124042 NA non-coding downstream 28028 4906555 ~ 4906840 (-)
G123757 NA non-coding downstream 36188 4896544 ~ 4898680 (-)
G124040 NA non-coding downstream 83533 4850677 ~ 4851335 (-)
G124099 NA non-coding upstream 178523 5114363 ~ 5114584 (-)
G124082 NA non-coding upstream 204062 5139902 ~ 5142817 (-)
G124105 NA non-coding upstream 209668 5145508 ~ 5147093 (-)
G124133 NA non-coding upstream 227885 5163725 ~ 5163956 (-)
G124140 NA non-coding upstream 276548 5212388 ~ 5212781 (-)
CI01000024_03938368_03941795 NA other downstream 992944 3938315 ~ 3941924 (-)
G123233 NA other downstream 2379832 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 4108017 824968 ~ 838550 (-)
G125457 NA other upstream 2421397 7357237 ~ 7358104 (-)
G125798 NA other upstream 3039827 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031824 sox21a coding NC_007117.7 CM002890.2 7414215 ~ 7415343 (+)