G124082


Basic Information

Item Value
gene id G124082
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 5139902 ~ 5142817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU140893
TTTGACAGCCATTTATTATTTGCCATTAAAATGGCTTGTTATATGTCGCACAGTTTTTTTGGAAACGTAAATATAAAACAAAACATTTTTAGTTTCAGTACAGCATTAAGAGCAAGTGGCTAATACAGAGATTAAGCTGAACAATAGTAGGGAAAACTGGATTTAAATGTGTGTGGCTAACCATCAGACTTGACAGATCCCCTTCCCAGGCATTTCATAGAACATTCCCAGCATCTTTCCAGGACAGTGTCTATTGAGTTTTATACTGTTGCTGCTTCCTCAATGCAGTCACAATACATGTTGTCATAGTTGTAGGCGTAATGGTGAACAGCAAGTTACATTGTGAAATGCCTTGTGTAATCATATTCTATTGTAGGAATGACAGCTTGCACAAATTTTAGGAAAATCAGAAGATACATATGGACCCCAAGTTCTCCTCCTCCTTCCGCCACAGTCTCGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU140893 True 462 lncRNA 0.38 2 5139902 5142817

Neighbor

gene id symbol gene type direction distance location
CI01000024_05125128_05131366 NA coding downstream 8536 5125123 ~ 5131366 (-)
CI01000024_05023856_05045877 DZIP1 coding downstream 93759 5023681 ~ 5046143 (-)
CI01000024_04952720_04980663 ABCC4 coding downstream 159239 4952477 ~ 4980663 (-)
CI01000024_04934952_04935671 SOX21A coding downstream 204062 4934868 ~ 4935840 (-)
CI01000024_04921413_04932000 NA coding downstream 207902 4920795 ~ 4932000 (-)
CI01000024_05231804_05251647 NA coding upstream 88447 5231264 ~ 5251647 (-)
CI01000024_05253329_05288232 RAPGEF4 coding upstream 109621 5252438 ~ 5288232 (-)
CI01000024_05295273_05311854 NA coding upstream 152378 5295195 ~ 5311854 (-)
CI01000024_05317964_05322464 DTD1 coding upstream 174571 5317388 ~ 5322464 (-)
CI01000024_05323160_05334951 SEC23B coding upstream 180304 5322896 ~ 5334951 (-)
G124099 NA non-coding downstream 25318 5114363 ~ 5114584 (-)
G123748 NA non-coding downstream 220850 4914340 ~ 4919052 (-)
G124044 NA non-coding downstream 228959 4910730 ~ 4910943 (-)
G124042 NA non-coding downstream 233062 4906555 ~ 4906840 (-)
G123757 NA non-coding downstream 241222 4896544 ~ 4898680 (-)
G124105 NA non-coding upstream 2691 5145508 ~ 5147093 (-)
G124133 NA non-coding upstream 20908 5163725 ~ 5163956 (-)
G124140 NA non-coding upstream 69571 5212388 ~ 5212781 (-)
G124120 NA non-coding upstream 70169 5212986 ~ 5214823 (-)
G124114 NA non-coding upstream 76552 5219369 ~ 5234193 (-)
CI01000024_03938368_03941795 NA other downstream 1197978 3938315 ~ 3941924 (-)
G123233 NA other downstream 2584866 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 4313051 824968 ~ 838550 (-)
G125457 NA other upstream 2214420 7357237 ~ 7358104 (-)
G125798 NA other upstream 2832850 7975667 ~ 7976047 (-)

Expression


Co-expression Network