CI01000024_05295273_05311854


Basic Information

Item Value
gene id CI01000024_05295273_05311854
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 5295195 ~ 5311854 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_05295273_05311854.mRNA
CTTGTCGATGCGTTTGCATTGTCACTGGGTACGTTGGAGCGACAAATGGTTCATGCTACGCAGGAAAAAGACAGAGATCCAGTCAGAGATCCAGACACGTCTATGTTCATAGAGATAGAGGGAGGGATGAGCACTGTGTGTCTACAGTATCCTGCGTTTGATGGGGATGGTACAAGCACAAGTGTGAGTGTGTTGGACAAACTGATACACACACACCCCATCTGGCTTCTGCGTTCCATCGACCAGCAAGAGGCCACTGGCATCCTACTGCAGCAACCAGCTGGGGTGTTTTTGGTCTGGAGGTCATCTGTCCTGCAAAAGAAGGTCTTGTCATTCCACATGGATGGTACCTCAGACTCCTCTGTGATTCACATCCCTTTAAAGGAGAGCCAGTACACATTTTCTCTGGAGGGCTCAGGAATTAGTTTTGCTGATCTCTTTCATCTTGTGGCCTTTTATTGTATTAGCAGAGACATTCTGCCGTCTACCCTGAAGCTTCCTGAGGCAATACACTCAGCTGAGACCCTCTCAGATCTGCATGAGGTGGCCCAGCAAGGGGCAGCGTTCTGGGAATATTCTGTCAAAAGACAACAAGAGCCAAAGGGTTCTCTGGTTCAGGACAGACCGTCGATTTCTCTGCACGACAACTTCTCTGACATCTTACTGATAGAGGATCAAACCTGTACCCCAACTGGGAATCTAAATGCCTCACTACCTCTGACTGACACCTGCTCTAATGCCCCTGAAGGCAAAAGAAGTTGCTCCAACAGTGCTTTGTCTTTTATCAACCCTGTCTTCCTCAAAACACAGCAAGATCTCACTGGAAATGCAGCAACAGTGATTGCAAAAGATACAACCGCAGAAAACGGAAAATTTCGTCCCCCTCCTCCACCAAGGCCACCTCCGCCTCGCATTTTGGTTCATACCCCTGCTTTACCCCCAGGACCGAGGACTATGCCTTTGAGTGCTGGCAATACCAGATTGAGCCAGAGACCCAAATCGATTGCTGGTTCCATGGGATCCAAACACCCCAGCTCTAAGAAACCTGCACCTCAACCTCCACCACGACCTCCACAACCGCCAGACATTGACAGCTACCGTTGCACCATTGCGTTAGATGATGATACCATCTCTAGGGCCCTGTCTCAAGCCAGTCAGACGCATACAACTCTCAAACCGACCAACAGCAACATTCTGCAGCAATGGACCGGACCAGAAGAGAAAGGGCGAAGCTCAAGTGGTTTGTCCACTTCCTCATCTGACTCTTTGGATTCTCCTCCGCATCCTCTCCCTTTGGGCCTATCCCAGGGTATGGGCCAAGGCCTTTCCACAGATGACAGCAGTGATGAGTATGACGAAGAGGAGGAAGACTATGGTGTGGGACTTGAAAGGGACCTGCATCTTCGCCTTCGTTCTTCCCGCAAGACAAAAAGACTCCTGGCGGTTGAACTAGTGGGGGCTCATCCAAGATCTCTTGTTATCCCACGAGCACTAAGGGGGCAATTCCGTAAGGTCCGAGGTGTCCTCAATGTTCTGGCTACACCTGAAAAACGCATCTTGCTCCGGATCATTGAGTTATCCCAGGACAAAGGTTCCTACTTTGGTTGCCTGGTGCAGGACTATTTGAGCTTTGTGCAGGAGAACAAAAACTGCCACTCATCCAGCCAAGATCTTCTGCAGACGCTCCGGCAGTTCATGACCCAGATGAAGGCTTACCTCATACAGAGCTCAGAGATGAACCCACCCATAGAGTCTTACATACCGGAGGACCAGATTGATCCGGTGTTGGAGAAGGCCATGCATAAGTGTGTGCTGAAACCCCTGTATGGCTGCTTGCAGTCAGCACTGCATGAGTTCCAGGTGGCCGATGGAGTGTGGCAGAGGCTGCAGGAGAATCTGGCCCTGGCCAAGGCCAAACAGCCTCACGAGTTGGGAGCGAATGCAGCGCGGCCACCAGACGCCTACGCCATCCACCGCATCCGCAGAAAACTCAGAGCCATGTGCAGCATGTACTCTCCTGAGAGGAAGATTATGATGCTACTGAAAGTCTGTAAACTCATCTACAATATTATGCAAGATAATGAAGTGAGGATGTTCGGAGCGGATGATTTCCTGCCCATGTTGACATATGTGTTGGTCCAGTGTGACATGCCTCAGTTGGACACTGAGATCCTGTATATGATGGAGCTGATAGATCCCCCATTACTGCATGGAGAAGGAGGTTATTACCTCACCAGTGCATACGGAGCAATGTCCCTGATTAAGAACTTCCAGGAAGAACAGGCTGCACGGATTCTCAGTTCTACAGCACGCGACACACTCCACCAGTGGCACCAGCGTCGCACACTGCAGAGAAACCTGCCCTCAGTGGACGACTTCCAGAATTACATGCGCGTGGCTCTGCAGAAGGCAGATAGCGGCTGCACGGCTAAAACCCTTCAGGTGCGGCCCTACGCCACAACGGAAGAGGTGTGCCGCCTTTGTGCACTTAAATTCCGCGTGTCTGATCCGGAAAACTACGGCCTCTTTCTTTTCACAGACGACAGCAGCCAGCAATTGGCTGCAGACACACACCCACAGTGGATAAAGGCAGAATTACACAGTCGACCGAAGCGTCAACACTTTTACTTTGTCTACAGGACGATAGCCGATATAAACTGTTCCATGCCTGTGTCTTCAAAGCAGGACATTGCCTGAACACTCAATAGCAGGAAAATGTGTATAAAGATTGCAAGATGAAAGATCTTCTGTTCAATGATACACCGACTCAATAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_05295273_05311854.mRNA True 2775 mRNA 0.50 10 5295195 5311854

Neighbor

gene id symbol gene type direction distance location
CI01000024_05253329_05288232 RAPGEF4 coding downstream 6963 5252438 ~ 5288232 (-)
CI01000024_05231804_05251647 NA coding downstream 43548 5231264 ~ 5251647 (-)
CI01000024_05125128_05131366 NA coding downstream 163829 5125123 ~ 5131366 (-)
CI01000024_05023856_05045877 DZIP1 coding downstream 249052 5023681 ~ 5046143 (-)
CI01000024_04952720_04980663 ABCC4 coding downstream 314532 4952477 ~ 4980663 (-)
CI01000024_05317964_05322464 DTD1 coding upstream 5534 5317388 ~ 5322464 (-)
CI01000024_05323160_05334951 SEC23B coding upstream 11267 5322896 ~ 5334951 (-)
CI01000024_05422777_05445492 TRAK2 coding upstream 110923 5422777 ~ 5445492 (-)
CI01000024_05749044_05807817 NA coding upstream 437043 5748897 ~ 5808081 (-)
CI01000024_05879244_05880952 NA coding upstream 566855 5878709 ~ 5881314 (-)
G124148 NA non-coding downstream 30845 5262961 ~ 5264350 (-)
G124114 NA non-coding downstream 61002 5219369 ~ 5234193 (-)
G124120 NA non-coding downstream 80372 5212986 ~ 5214823 (-)
G124140 NA non-coding downstream 82414 5212388 ~ 5212781 (-)
G124133 NA non-coding downstream 131239 5163725 ~ 5163956 (-)
G124164 NA non-coding upstream 66875 5378729 ~ 5378939 (-)
G124219 NA non-coding upstream 138920 5450774 ~ 5455225 (-)
G124170 NA non-coding upstream 154955 5466809 ~ 5467868 (-)
G124256 NA non-coding upstream 215146 5527000 ~ 5527499 (-)
CI01000024_03938368_03941795 NA other downstream 1353271 3938315 ~ 3941924 (-)
G123233 NA other downstream 2740159 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 4468344 824968 ~ 838550 (-)
G125457 NA other upstream 2045383 7357237 ~ 7358104 (-)
G125798 NA other upstream 2663813 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location