CI01000024_04900693_04903891 (ARF2B, ARF3A, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L)


Basic Information

Item Value
gene id CI01000024_04900693_04903891
gene name ARF2B, ARF3A, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4899850 ~ 4903966 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_04900693_04903891.mRNA
TCAGTGGATTGTTCTACAGAAAGGACTTGCAGCTTTCTGGATTGTGATTGGCTAGACGAAGCAAAACATTGAATCATGGGTAATATTTTTGGCAATCTGCTGAAGAGTCTAATAGGGAAGAAAGAGATGAGAATTCTGATGGTTGGATTAGATGCTGCTGGTAAAACCACTATCCTTTACAAACTGAAGCTGGGAGAGATTGTGACCACCATCCCAACCATTGGCTTTAATGTGGAGACAGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTGGGTGGTCAGGATAAAATCAGACCACTCTGGAGACACTACTTTCAAAATACACAGGGTCTTATCTTCGTGGTTGACAGCAACGATCGGGAGAGAGTGAACGAAGCGCGGGAGGAGTTAATGCGGATGCTCGCAGAAGACGAACTGCGTGATGCTGTTCTTCTTGTCTTTGCAAACAAACAGGATCTGCCAAATGCTATGAATGCAGCTGAGATCACAGATAAACTCGGCCTCCACTCACTCCGCCACCGCAACTGGTATATACAAGCGACCTGTGCGACCAGCGGCGACGGTCTGTACGAAGGGCTCGACTGGCTTGCCAATCAGCTCAAGAATAAGAAGTGAGAGGCGGGATTTTCATTATGTGGCCGTCTCTCACTTTGGGAAGGGGGTGGGACTAATTTGGCCTTTGGAATCGTTATGTTTGATTTTTCTTTGTTTCATTTAGTTTCTTTTTGTTGTATTCTGGCAAATACAGTATGTGGTTTATAGAGCCTTCTATGCTCTGTGTAAATCATCTGTATGTATGTACGCACACGCATTCAAACGCACACTCGCAGATCAACAGGCATCTAATTCACTTTCCATTTTCATTGTATAATGAACGCCGGTCAGTACAGTGTCGGTATATAGCATCAACGTTTGGTCGATATCATCTCCGTCTCTCCCACACTCACTCACTCTTTCCATGTTTACAATCAGTGATCAGTGTTGTCCTTGACTGCCATTAAAAAGATAGCTAGCTATGGGTCTGAGCATGCTCATGTATTACGTAATATGCTTATGCGTTTCCTTGTATTGTCAAAATGCTCTGTTTTTAGTAAATGCGATTATGATGCAGTTTGCCTCATCACGCACACACAATACCCACAGTCTACGAGCCCCGCGGTCTGTGATTGCGTTAGATACCCTGCTGTGTTTTGCATGGCTCTTTCTCTCGGTGTCGTGTGTTAAGCGTTGTGGTGTAGTAGAGGTTAGATCTGCATGTGTGTGTTTAGTCACAGAGCTGGTTGGTGTTGCATGCTGCTTTGTGGCTGTGCTGTACTAGAATGGACACAGTGATTGGATGCTGTAGAAGGAATGTAGTCCGTGTTTCTGCAAACTTCCCTTGCCTAAATTAGGAGTGAAATGTGGTGCTTTTGGGTAGTCCATCATAAACCAACGCATTCGAGTAAAGCTGTAAATAAA

Function

symbol description
arf1 Predicted to enable GTP binding activity. Acts upstream of or within semicircular canal development. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).
arf2b Predicted to enable GTP binding activity. Predicted to be involved in endocytic recycling and intracellular protein transport. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).
arf2a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane.
arf3a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARF3 (ADP ribosylation factor 3).
arf5 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in axial chorda mesoderm; axis; central nervous system; notochord; and polster.
arf3 Predicted to enable GTP binding activity. Involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in extracellular exosome.
arf2 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL17A (ADP ribosylation factor like GTPase 17A).

GO:

id name namespace
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K06883 K06883; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_04900693_04903891.mRNA True 1464 mRNA 0.44 4 4899850 4903966

Neighbor

gene id symbol gene type direction distance location
CI01000024_04890922_04892119 NA coding downstream 7696 4890776 ~ 4892154 (-)
CI01000024_04860251_04882047 ERBB3A coding downstream 17046 4860102 ~ 4882804 (-)
CI01000024_04849096_04855992 NA coding downstream 43541 4848825 ~ 4856309 (-)
CI01000024_04775678_04783105 NA coding downstream 116745 4774983 ~ 4783105 (-)
CI01000024_04596928_04606949 NA coding downstream 292901 4596755 ~ 4606949 (-)
CI01000024_04921413_04932000 NA coding upstream 16829 4920795 ~ 4932000 (-)
CI01000024_04934952_04935671 SOX21A coding upstream 30902 4934868 ~ 4935840 (-)
CI01000024_04952720_04980663 ABCC4 coding upstream 48511 4952477 ~ 4980663 (-)
CI01000024_05023856_05045877 DZIP1 coding upstream 119715 5023681 ~ 5046143 (-)
CI01000024_05125128_05131366 NA coding upstream 221157 5125123 ~ 5131366 (-)
G123757 NA non-coding downstream 1170 4896544 ~ 4898680 (-)
G124040 NA non-coding downstream 48515 4850677 ~ 4851335 (-)
G124035 NA non-coding downstream 132018 4767230 ~ 4767832 (-)
G124032 NA non-coding downstream 134848 4764718 ~ 4765002 (-)
G123737 NA non-coding downstream 160251 4737303 ~ 4739599 (-)
G124042 NA non-coding upstream 2589 4906555 ~ 4906840 (-)
G124044 NA non-coding upstream 6764 4910730 ~ 4910943 (-)
G123748 NA non-coding upstream 10374 4914340 ~ 4919052 (-)
G124099 NA non-coding upstream 210397 5114363 ~ 5114584 (-)
G124082 NA non-coding upstream 235936 5139902 ~ 5142817 (-)
CI01000024_03938368_03941795 NA other downstream 957926 3938315 ~ 3941924 (-)
G123233 NA other downstream 2344814 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 4072999 824968 ~ 838550 (-)
G125457 NA other upstream 2453271 7357237 ~ 7358104 (-)
G125798 NA other upstream 3071701 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031827 arf3b coding NC_007117.7 CM002890.2 7444899 ~ 7452559 (+)
bowfin (Amia calva) AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 misc CM030126.1 CM030126.1 13257698 ~ 13261822 (-)
tiger barb (Puntius tetrazona) LOC122346517 NA non-coding NC_056704.1 CM032073.1 9082597 ~ 9084953 (+)