LOC122346517


Basic Information

Item Value
gene id LOC122346517
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9082597 ~ 9084953 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU64999
ACTGACACTTCGTTTGTTTGCTAGTGGTTCGCAGGTGGATCTCTTCGGATCTCCTCAGGAGATAGtTTTACGAAACTTACGGCTCATATGCGAGGGATTTGTATATGCCATTTTGGATTCCTTACAAGGgaGGGCCATCTTGAAGTTTGCTCCTGCTTCGCTTCAGATGACCGCAACTGTACATAAGAaatattatctatatatctcCTTACCTATTAGCGTAGGTTTGATGATTTTCAATCTGCTTTTGTATTATGGCAATGTCCCTAGTATCTGTAAAtgaacttttttgtttatttgtaagcGGCACTCCACAGGATGATACAAAAGGAAATGGCGAGTTTTGCAAAAAGGATAGTGTTCAACTGAACATATGGCTAGAGACTTTAGTAAATTTTGTATtctgcaattaattattattattattttttttaaaatgtgaaactaCTACATTTGACCAAACATAAAATTCTGAacgtattataaaatgtaatattcatgtgaacaaaattttcagcatcattactccagatttcagtgtcacatgatcattcagaattcattctatgctgatttgctgtttaagaaacatttcttattatcgatgttgaaaacagttgtgaaaccatttttctgtgaaaaccatGGTATTTTCAGCATTCTTTTAATTGAACTTGCAAAAGAGTAGTATTacaagttttgtttatttttaaattttaagagTTAATCAATCCATCTATTCTgtatgaaccttttttttttttttttttttttttttaaacaaatctttaaaatattgaaaatgtttctaaaatagaaaaattactAGTTATTACAACATATTTCAAATCTATCATGTTGTTGCAAATTATTTCGTGTTTATTCAGAATATCTTCCTATAAAGAGACCTAGTGAGTATCAATGGTTTTCACATTTTTAGGGAGCAAACATTTCAGTGCACTGTAAAGATTTTGTGATTGAGACAGCCCCACAATATTCttgaaagagaaaattaaaaattcttttAGTGATGAATGGCATCACACATACATCATATGTAACCATGTTTAATAGGAGTTCATGATAAAATTCAATATAgctcattataatcagtaatgcGGTTTACACTGGTTGTGGCATGGTGTGACAACAAATCCCATGCAAGTACAATTtgcaaatgggaaaaaaatgacttttttaaggGGGGTTCTTGcactttattataataaattgattAATATTTCAATCCCTTGTGTTATAAA
>TU65000
ACTGACACTTCGTTTGTTTGCTAGTGGTTCGCAGGTGGATCTCTTCGGATCTCCTCAGGAGATAGgaGGGCCATCTTGAAGTTTGCTCCTGCTTCGCTTCAGATGACCGCAACTGTACATAAGAaatattatctatatatctcCTTACCTATTAGCGTAGGTTTGATGATTTTCAATCTGCTTTTGTATTATGGCAATGTCCCTAGTATCTGTAAAtgaacttttttgtttatttgtaagcGGCACTCCACAGGATGATACAAAAGGAAATGGCGAGTTTTGCAAAAAGGATAGTGTTCAACTGAACATATGGCTAGAGACTTTAGTAAATTTTGTATtctgcaattaattattattattattttttttaaaatgtgaaactaCTACATTTGACCAAACATAAAATTCTGAacgtattataaaatgtaatattcatgtgaacaaaattttcagcatcattactccagatttcagtgtcacatgatcattcagaattcattctatgctgatttgctgtttaagaaacatttcttattatcgatgttgaaaacagttgtgaaaccatttttctgtgaaaaccatGGTATTTTCAGCATTCTTTTAATTGAACTTGCAAAAGAGTAGTATTacaagttttgtttatttttaaattttaagagTTAATCAATCCATCTATTCTgtatgaaccttttttttttttttttttttttttttaaacaaatctttaaaatattgaaaatgtttctaaaatagaaaaattactAGTTATTACAACATATTTCAAATCTATCATGTTGTTGCAAATTATTTCGTGTTTATTCAGAATATCTTCCTATAAAGAGACCTAGTGAGTATCAATGGTTTTCACATTTTTAGGGAGCAAACATTTCAGTGCACTGTAAAGATTTTGTGATTGAGACAGCCCCACAATATTCttgaaagagaaaattaaaaattcttttAGTGATGAATGGCATCACACATACATCATATGTAACCATGTTTAATAGGAGTTCATGATAAAATTCAATATAgctcattataatcagtaatgcGGTTTACACTGGTTGTGGCATGGTGTGACAACAAATCCCATGCAAGTACAATTtgcaaatgggaaaaaaatgacttttttaaggGGGGTTCTTGcactttattataataaattgattAATATTTCAATCCCTTGTGTTATAAA
>TU65001
ACTGACACTTCGTTTGTTTGCTAGTGGTTCGCAGGTGGATCTCTTCGGATCTCCTCAGGAGATAGgaGGGCCATCTTGAAGTTTGCTCCTGCTTCGCTTCAGATGACCGCAACTGTACATAAGAaatattatctatatatctcCTTACCTATTAGCGTAGGTTTGATGATTTTCAATCTGCTTTTGTATTATGGCAATGTCCCTAGTATCTGTAAAtgaacttttttgtttatttgtaagcGGCACTCCACAGGATGATACAAAAGGAAATGGCGAGTTTTGCAAAAAGGATAGTGTTCAACTGAACATATGGCTAGAGACTTTAGTAAATTTTGTATtctgcaattaattattattattattttttttaaaatgtgaaactaCTACATTTGACCAAACATAAAATTCTGAacgtattataaaatgtaatattcatgtgaacaaaattttcagcatcattactccagatttcagtgtcacatgatcattcagaattcattctatgctgatttgctgtttaagaaacatttcttattatcgatgttgaaaacagttgtgaaaccatttttctgtgaaaaccatGGTATTTTCAGCATTCTTTTAATTGAACTTGCAAAAGAGTAGTATTacaagttttgtttatttttaaattttaagagTTAATCAATCCATCTATTCTgtatgaaccttttttttttttttttttttttttttaaacaaatctttaaaatattgaaaatgtttctaaaatagaaaaattactAGTTATTACAACATATTTCAAATCTATCATGTTGTTGCAAATTATTTCGTGTTTATTCAGAATATCTTCCTATAAAGAGACCTAGTGAGTATCAATGGTTTTCACATTTTTAGGGAGCAAACATTTCAGTGCACTGTAAAGATTTTGTGATTGAGACAGCCCCACAATATTCttgaaagagaaaattaaaaattcttttAGTGATGAATGGCATCACACATACATCATATGTAACCATGTTTAATAGGAGTTCATGATAAAATTCAATATAgctcattataatcagtaatgcGGTTTACACTGGTTGTGGCATGGTGTGACAACAAATCCCATGCAAGTACAATTtgcaaatgggaaaaaaatgacttttttaaggGGGGTTCTTGcactttattataataaattgattAATATTTCAATCCCTTGTGTTATAAAGTTtgaagtctgtttttttttggttataaactgcgttcatttgatcataaatgaaaccaataaatgttgtgaaatagtactattattatttaaactaacgtttttatgtgaatatgttgtaaattgttaaaatgttatttattgcaaaattaatttttggaaagcatgatttctgaaggatctgtAAAATTACCAaccaaattacttttaaatataaataaaataaatgcagcagtggtgagcataaaaaaaacaaatctgatcCTTAAACTTTAGGTAGAGTATGTTTGAGGTATTACTAACATGTCTAGAGAACATGTCTTCCTCGACAGAGGAACACTTGAACTCTAGTGCATGGGAGAATCTAGGAACATAATCACACAGCCAACA
>XR_006251139.1
GGTGTTTGTTTCTGGCCGGCAGAAATACACTGACACTTCGTTTGTTTGCTAGTGGTTCGCAGGTGGATCTCTTCGGATCTCCTCAGGAGATAGtTTTACGAAACTTACGGCTCATATGCGAGGGATTTGTATATGCCATTTTGGATTCCTTACAAGGgaGGGCCATCTTGAAGTTTGCTCCTGCTTCGCTTCAGATGACCGCAACTGTACATAAGAaatattatctatatatctcCTTACCTATTAGCGTAGGTTTGATGATTTTCAATCTGCTTTTGTATTATGGCAATGTCCCTAGTATCTGTAAAtgaacttttttgtttatttgtaagcGGCACTCCACAGGATGATACAAAAGGAAATGGCGAGTTTTGCAAAAAGGATAGTGTTCAACTGAACATATGGCTAGAGACTTTAGTAAATTTTGTATtctgcaattaattattattattattttttttaaaatgtgaaactaCTACATTTGACCAAACATAAAATTCTGAacgtattataaaatgtaatattcatgtgaacaaaattttcagcatcattactccagatttcagtgtcacatgatcattcagaattcattctatgctgatttgctgtttaagaaacatttcttattatcgatgttgaaaacagttgtgaaaccatttttctgtgaaaaccatGGTATTTTCAGCATTCTTTTAATTGAACTTGCAAAAGAGTAGTATTacaagttttgtttatttttaaattttaagagTTAATCAATCCATCTATTCTgtatgaaccttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64999 False 1262 lncRNA 0.31 3 9082625 9084563
TU65000 False 1198 lncRNA 0.30 2 9082625 9084563
TU65001 True 1588 lncRNA 0.30 2 9082625 9084953
XR_006251139.1 False 803 lncRNA 0.33 3 9082597 9084076

Neighbor

gene id symbol gene type direction distance location
LOC122346991 cep95 coding upstream 13936 9035026 ~ 9068661 (+)
polg2 polg2 coding upstream 71688 9002581 ~ 9010909 (+)
ten1 ten1 coding upstream 127343 8951326 ~ 8955254 (+)
aanat1 aanat,aanat1,LOC107742556 coding upstream 196216 8884440 ~ 8886381 (+)
cygb2 cygb,cygb2,LOC107698994 coding upstream 478796 8564382 ~ 8603801 (+)
p4hb p4hb,LOC107553316,LOC107591928,LOC107701207 coding downstream 845817 9930770 ~ 9940743 (+)
ppp1r27b ppp1r27,LOC107710012,LOC107591937,LOC107553297 coding downstream 855953 9940906 ~ 9943224 (+)
ccdc40 ccdc40,LOC107710029,LOC107669524 coding downstream 864898 9949851 ~ 9958610 (+)
card14 card14,LOC107710011,LOC107669523,LOC107553296 coding downstream 875415 9960368 ~ 9973522 (+)
LOC122347046 cbx4,LOC107710010,LOC107669529,LOC107553295 coding downstream 928936 10013889 ~ 10018092 (+)
G43861 NA non-coding upstream 12594 9068841 ~ 9070003 (+)
G43863 NA non-coding upstream 19835 9060351 ~ 9062762 (+)
G43851 NA non-coding upstream 63869 9018417 ~ 9018728 (+)
G43849 NA non-coding upstream 68772 9013567 ~ 9013825 (+)
G43848 NA non-coding upstream 70209 9012188 ~ 9012388 (+)
trnar-ccg_25 NA non-coding downstream 1120 9086073 ~ 9086145 (+)
G43885 NA non-coding downstream 174040 9258993 ~ 9259777 (+)
G43891 NA non-coding downstream 177576 9262529 ~ 9263084 (+)
G43895 NA non-coding downstream 183380 9268333 ~ 9269090 (+)
G43901 NA non-coding downstream 187420 9272373 ~ 9273065 (+)
G43745 NA other upstream 345196 8590104 ~ 8737401 (+)
lhfpl4a lhfpl4a,lhfpl4,LOC107716887,LOC107656118,LOC107586345,LOC107710167 other upstream 740451 8315037 ~ 8342146 (+)
G43585 NA other upstream 836584 8245167 ~ 8246013 (+)
G43406 speg,LOC107731772,LOC107688815,LOC107586363,LOC107694912,LOC107719300 other upstream 1258341 7821609 ~ 7824256 (+)
G43405 spega,LOC107731772,LOC107586363,LOC107688815,LOC107719300,LOC107694912 other upstream 1261067 7820093 ~ 7821530 (+)
G43879 NA other downstream 168196 9253149 ~ 9253740 (+)
G43889 NA other downstream 175680 9260633 ~ 9261862 (+)
LOC122346821 endov other downstream 277189 9362142 ~ 9430655 (+)
G43962 rptor,LOC107728013,LOC107700860,LOC107553319 other downstream 701887 9786840 ~ 9811575 (+)
pecam1b NA other downstream 831097 9916050 ~ 9926257 (+)

Expression


Co-expression Network