CI01000024_04860251_04882047 (ERBB3A)


Basic Information

Item Value
gene id CI01000024_04860251_04882047
gene name ERBB3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4860102 ~ 4882804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_04860251_04882047.mRNA
ATCAGCTGATGCACATTTTAAGATTTTTTGCATTAAATAAGGAATAATGTGCAGTCAGTCGGTTATTATTTTAAAATGACATCTGTCTGGTCTAATTACAAGGCTTCTTACCTCATAAATATATAAATGTTACATATTAGCTGAGAGTAATGCGATTGACATTGTGCACTTTAGCAATCATTATACAGAAATATTTGAAGACACATATTTCTTTTAATTAGAAATGTATTATATACACTACCATTTAAAAGTGTGGGGACAGTAAGATTTTTTATTTTTATTTTTTTAAGAAATTAATAATTTTATTCAGCAAAGATCCATTAAACTGATCAAAAGTGATAGTAAAACCATTTTAAAAATTATATTTCAAGTCATCTTGAAAAATATTAAGAAGCACTACTGTTTTAAACATTAATAACAGTGTTTCTTGAGTAGAAATTTAGCAAATCAACATATCAATGATTTCTGAAGGATCATGTGACACTGAAGACACTGAAGAGTAATGATGCTGAAAGTTCAGCTTTGCATCACAGGGATAAATTACATTTTAAAATATATTCAACTAGAAAACAGTTAGTTAAAATTGTACCTGTACTGTATTTTTTCATCAAATATATGCAGTCTTGTTGAGCATAAGAGACTTTTTTTTTCAAAAACATATAAAAATCTTACCGATCCCGAACTTTTGAATGGTAGTTTATTGACTTTTGGAACAATAAATTCACTCTCTCTCTCTCTCTCTCTTTCTACAGTGGCGATGTGTACAGGCACTCAGAACTTGTTGAGTGTGACAGGAACCTCTGAGGTCCAGTACAAGCTCATGAAGGAGATGTACACGGGCTGCCAGATTGTCATAGGAAACCTGGAGATCACACAGATGGAGCACAACCGTGATTTCTCATTCCTACAGTCTATCCGTGAGGTAACAGGGTACATCCTCATCGCTATAAACCAGTTCAGACGTTTACCGCTGGAACAGTTGCGAGTCATTCGAGGGACGTCTCTGTATGAAGATCGGTTTGCTCTTGCCGTCCTCGTCAACTACCAGAAAGATGGGGTGTATGGACTAAAGGAGCTGGGCCTCACACACTTAACAGAGATCCTGGAGGGGGGAGTGCAGATCATCCAGAATAAATTCTTGAGCTATGCGCCGCAGATTAACTGGTTAGATATTGTGAAGGACAGTGGAGCAGAAGTCATCATCAAAGACAATGGACCAGAACTGACGAAGACAGTGTGCGCACCGCAGTGTAACGGCCGCTGTTTCGGACGCAGCCCCAGCGAGTGCTGTCACATAGAGTGTGCCGGGGGCTGCACCGGACCTCTCGACACCAACTGCTTTGCCTGCAGAAATTTTAACAACTCAGGGTCGTGTGTGCCGCAGTGTCCCCAGGCTCTCATCTATAATAAAGTGACGTTCAAATTGGAACCGAATCCTAATGCAAAATACCAGTTCGGCACGATGTGTGTAGCACATTGTCCTACTAACTTTGTTGTAGATGGCAGTTCATGTGTTAGCAGCTGTCCAGCAAACAAGATGGAGGTGGATAAAAAGGGGATGAAAAGATGTGAGCCGTGTGTGGGTCTCTGTCCAAAAGCATGTTTTGGCACTGGTACACCTTCCAAACAGACCGTAGACTCACAGAACATCGACAGCTTCATAAACTGCACTAAAATTCAGGGCAGCCTGCATTTCCTTGTAACAGGAATTAGAGGTGACAGTTACAATAATATTAGTGCTCTTGATCCAAAGAAACTGAAGATCTTCAACACTGTCAGAGAGATCACAGACATTCTGAGTATTCAGTCTTGGCCCGAAGAGTTGGAAGATCTTTCTGTCTTCTCAAATCTTGCAACAATACAAGGACGAACACTGTACAGAGGAGTAAGCTCTAAGAGGGGTTACTCGCTTTTGGTGATGAAGATTCCTACGTTGAAGTCCCTAGGTCTTCGTTCTCTCAAGCGAATTGGTGACGGAGGCATCTACATTACAGGAAATAAGCAGCTCTGCTATCACCACACAGTTAACTGGACACGTCTGTTCGGGAGCGGCCCCAGGGCGGTGCGCCGCCAGAAGTCCCTCGACATCAAAGAGAACCACCCACAAGAGCTATGCATTGAAGAAGGGCATGTGTGTGATCCCTTGTGTTCATCTGAGGGCTGCTGGGGTCCGGGACCCGATCAGTGTCTGTCCTGCAAGAACTACAGCAGAGGAGGAACATGTGTGCCACACTGCAACTTCCTGTCTGGTGAAAAACGAGAGTTTGCAGGACCTAAAGGAGAGTGTATGCCTTGTCACCAGGAGTGTGCGGTGCAGGACAACAAACTCACCTGCAAAGGACCGGGTGCTGATGAGTGTGAAGCATGTGTGCATTTGCAGGATGGGCCTTACTGCGTGTCCTCGTGTCCAGAGGGGGTTCAGGGGGAAAACGGGCTCATCATTTATAAGTTCGCCAGTGGCCAATACAAATGCCAACCATGCCATGCCAACTGCACCCTGGGCTTGCCGGTGACAGCAATAGTGCTGAGCGTTATATTCGGGGTGATGGTCGCATTCTCAGTGTTTGTGCTGAGCGTTCTTTATCGCAGAAGTGTTGCCATCCGCCAAAAACGTGCCATGAGGAGATATCTTCAGAGTGGAGAGAGTTTTGAACCACTGGATCCCGGAGAGAAAGGTGTGAAAGTACATGCTCGGATTTTGAGAGGGCCTGAACTACGAAAGATCAAACCTCTTGGCTCTGGAGTGTTTGGCACTGTGCACAAGGGAGTTTGGATACCCGAGGGAGACACAGTAAAGATTCCAGTGGCTATCAAGACTATCCAAGACCGTACAGGACGACAGACCTTTCACGAACTTACAGATCATATGTTGGCTATGGGGAGTTTGGACCACCCGTATATAGTGCGGCTCTTAGGCATCTGTCCGGGGCCCAGTCTACAGCTGGTCACTCAGCTCAGTCCACAGGGGTCGTTGCTGGAGCACATCCGGCAGCGCAGAGAGGGACTCAACCCTCAGAGACTGCTCAACTGGTGTGTGCAGATTGCCAAGGGTATGTACTACCTAGAGGAGCAGAGAATGGTCCACAGGAACCTGGCTGCTCGCAACATTCTGCTCAAGAGTGACTTTATAGTTCAAATAGCTGATTATGGCATCGCTGACCTCCTTTACCCTGATGACAAGAAATACTTCTTTAATGAAATTAAGACGCCAATTAAGTGGATGGCCCTTGAAAGCATCTTGTTCCGCAGATATACACACCAGAGTGATGTATGGAGCTATGGTGTGACAGTCTGGGAAATGATGTCATATGGGGCAGAGCCTTACTCTGCCATGCGACCACAAGAAGTACCTGATCTGTTAGAGAAAGGGGAACGCCTTTCTCAACCTCAGATCTGCACCATCGATGTCTACATGGTCATGGTCAAATGTTGGATGATTGATGAAAATGTTCGGCCAACTTTCAAGGAGCTAGCCAATGAGTTCACCCGAATGGCCAGAGACCCTTCTCGGTATCTTGTCATCAAAGAGGAGTACAGGCCTGAATCGGCCATAGATGAGTCATATCAGAGAGGAACTGAGATGGACATTCTAGGGGTGGCTCTGGAGGACCAGGAAGATGAAGTCTCGGAAGATGTAATAGACATGCATCGCTATGTAACGCCATCTAGAAGCTTCTCTAGACTGCGTATAGATTCTCATCGGTCAAGTCTGACTCCATCCAGTATCGCTGGATATCTACCAATGACCCCTGGTCTGGAGAGCTCTGTGCAGACGACGGGATGGGCATCTCGTTCCCGTCTGGACTCTGCGTGCACTGTTTCTGTGAGCTCGGAGGGACAGGGAACTGCAGTGGAGCTGGAAATAAATGAGGACTTCCCATTGGTTGGCAGCACGAGGAGGGTCACGCATCGCGAGGACAGCGCTTACATGTCACAGCGGGACAGCCTATCAGGGCCTCCAGAAACAACCTCCACAGGGACTCAAGGAGAAGAGGACCAAAATGAATATGTGTTGCCTGGATTTGGTGAAAGTCCAGAGAAAGAAACTCTTCTATTCTCATCACGTGCAACACGTTCTCAAAGGAGACTGTCAAGAGGTCATTCCGGTGACTTTTTAGAAGCCCACACCAGGGCAGGTGAAGAATACGAGTATATGAACAACCAGACCCTCTCACTCTGCCATATACCAGGGCAGCTTAAAGACTCCAATCAGCGACCGCCGCGAAACCGCAGTGCCTCCTTCAACCCTGCCGGGTTGTACAGCAATCACAAACCTCAAGGATCCGGCAGACCCAGTAAGAGATCATCGATCGAAGGCTCAGAAAGTAGCGGGGGTCTCTCCCAGTCCTCGACTGAACAAAGAAGTCACAGCGACGGCGATTTCCTGTCCAGTGAAGCAGAGTACACGGACGCTGATCTGGATCTTCAGGAGGTTCAGTACGAGTACATGGACATCCGTGGTGGAGGAGGAGGACCACCAAGCAACATGGTACTCAAACTTCACCTCCAAAGACCAGATTCCCACCCTCTTCTCAGAAGATCGCCACAAGACGATGAAGATGAATATGTGGAGGATGACTATCAGTACACTAACCGCCAGCCTCGGCTGAGGAATTCGCTCAGGGTGCAGGGGTTAATGGAAGGGGAAGGAGAAGTGTATGAATACGAGGATATGGACTCATTGGCTGCAGGTGGAGCCTCGGCAGCTGAATACCAGAACATGGAGGGAGAAGACGAGGAGAACGTTGGGCTGAGGGACAGAGAGTGTTCAGGGGGGCCCGGAGCGTATGTAAAAGTGCATGCAGGGATGGAACATAAAGCTTTTGATAATCCTGACTACTGGCACAGCAGGTCGTTTCATAAAGCTAGCGCTGTCCGCACATAGAAACGGAGAATGGATTGAAGGATCTTGATGCAAATGAACAAATGCAGGTTGAACTGTCTTCAGTGACCAATGTTCAGGACATTATTCAATATTGCACTTCTTACTGGCATAAATCCATGATAAAATTGATACAACCATGACAAAATAAA

Function

symbol description
erbb3a Predicted to enable neuregulin binding activity; neuregulin receptor activity; and transmembrane receptor protein tyrosine kinase activity. Predicted to be involved in several processes, including positive regulation of cell population proliferation; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in epidermis; fin; glial cell; and heart. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome 2; lung adenocarcinoma; and lung non-small cell carcinoma. Orthologous to human ERBB3 (erb-b2 receptor tyrosine kinase 3).

NR:

description
erbB3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K05084 ERBB3, HER3; receptor tyrosine-protein kinase erbB-3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_04860251_04882047.mRNA True 5034 mRNA 0.46 26 4860102 4882804

Neighbor

gene id symbol gene type direction distance location
CI01000024_04849096_04855992 NA coding downstream 3793 4848825 ~ 4856309 (-)
CI01000024_04775678_04783105 NA coding downstream 76997 4774983 ~ 4783105 (-)
CI01000024_04596928_04606949 NA coding downstream 253153 4596755 ~ 4606949 (-)
CI01000024_04584906_04590559 NA coding downstream 269381 4584454 ~ 4590721 (-)
CI01000024_04565630_04567525 KLF2 coding downstream 292468 4565222 ~ 4567634 (-)
CI01000024_04890922_04892119 NA coding upstream 7972 4890776 ~ 4892154 (-)
CI01000024_04900693_04903891 ARF2B, ARF3A, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding upstream 17046 4899850 ~ 4903966 (-)
CI01000024_04921413_04932000 NA coding upstream 37991 4920795 ~ 4932000 (-)
CI01000024_04934952_04935671 SOX21A coding upstream 52064 4934868 ~ 4935840 (-)
CI01000024_04952720_04980663 ABCC4 coding upstream 69673 4952477 ~ 4980663 (-)
G124040 NA non-coding downstream 8767 4850677 ~ 4851335 (-)
G124035 NA non-coding downstream 92270 4767230 ~ 4767832 (-)
G124032 NA non-coding downstream 95100 4764718 ~ 4765002 (-)
G123737 NA non-coding downstream 120503 4737303 ~ 4739599 (-)
G123783 NA non-coding downstream 143073 4715864 ~ 4717029 (-)
G123757 NA non-coding upstream 13740 4896544 ~ 4898680 (-)
G124042 NA non-coding upstream 23751 4906555 ~ 4906840 (-)
G124044 NA non-coding upstream 27926 4910730 ~ 4910943 (-)
G123748 NA non-coding upstream 31536 4914340 ~ 4919052 (-)
G124099 NA non-coding upstream 231559 5114363 ~ 5114584 (-)
CI01000024_03938368_03941795 NA other downstream 918178 3938315 ~ 3941924 (-)
G123233 NA other downstream 2305066 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 4033251 824968 ~ 838550 (-)
G125457 NA other upstream 2474433 7357237 ~ 7358104 (-)
G125798 NA other upstream 3092863 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location