RNA id: CI01000024_06944906_06955771.mRNA


Basic Information

Item Value
RNA id CI01000024_06944906_06955771.mRNA
length 2354
RNA type mRNA
GC content 0.42
exon number 9
gene id CI01000024_06944906_06955771
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 6943962 ~ 6955771 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCAGCAGAAGTGTATTGCTGTGTTTGCACTGGTTTGCTGCTTTGCTGTTCTGGTGGCTCTAATTTTCTCTGCTGTGGATGTCTGGGGAGAGGATGAGGATGGTGTCACTGAGGAGAACTGCAGCAAAAATTGTCGCATTGTCCTTGTGGAAAACATCCCAGGGGAGCTGTCATTCAATAGTTCAACCCATGTCCCTCTTTCTGTGGGTCTCAACCACCTTTTGGACCAAGCAAAACTGTCAGTTGAGATAGTGTCCCCATACTGGGCTCTGACCTCCACCGATCAGGGGTCACGGCTTTATTCTGCCTATCAGGGTCAGTATTTGTTTCAGAGATTATTAAACCTGAAGTCTCGAGGTGTCAAATTAAAGATTGTCAGTGACCAGCCCAACTCCATTGAGCTAAAAAGCATGTCTGACCGCTATGCAGAAGTCCGCTATGTCAACATGACGGCCCTCACCAGAGGTAGACTGCTTTCCTGCTTTTGGGTAGTGGACAGGAAGCACATTTACATTGGCAGTGCTGGCATGAACTGGAAGGCTCTGTCCAAGCTGAAGGAGCTTGGGGTGATAGTGTATGACTGTAGTTGTCTGGCTCTGGACCTGCACAGGATCTTTTCTTTCTACTGGCAGCTGCAGTACAGAGACTACATCCCTTCAATCTGGTCCAAAAGAGTCACGGCCGTGTTCAGCAGAGACCAGCCACTCCAGCTCAGACTCAACGATACAGACGCTTCTGCCTATGTGTCGACGTCTCCAGATCTGTTTTGCCCCAAGGGTCGAAGCAGAGATATAGATGCTATACGACATGTGATTCGAGAAGCAAAGAGATTCATCTACATCTCTGTAACTGATTACCTGCCCTTAGTCAACCGCAGCTTCAGAGGATCACCAATTATAAGATACTGGTCGCCAATAGACGAGATGCTCAGGGAGGCTGTAGTATTGAGAGAGGTCAAAGTTCGTCTCTTAATCAGTCTCTGGACACGTACACATCCACTGACCTTTAACTTTATGACATCAATGCAAGCTCTATGCACAGGACTGCCAGTCTGCTCTATAGAGGTGAGATTTTACAGAGGCAAGGAGCAGATGGGAGGATTTCAGCACAGAATAAATGAGAATAAATTTATGGTGACAGACAACGCAGGATACATTGGGAATCTGGACTGGGTTGGCAGTGAGTTTGCCTTCAACGCAGGAGCCGGGCTGGTGATTCAGGAATCAGAGAACCAGCGGAAAGGGCAGGACTCAATTGTAGAGCAGCTGACTGCTGCTTTTGAAAGAGACTGGTTTTCACCCTACACAATAAGCCTGCTATCTGGCAGCACAACCCTTCAGGAGAGCCAACATGGGAGGCAGAAACTGCAATCTCTGAAGACAAAAGCAGAGAGCAGAGAGCATGAGTGAGCGGCGGGAATTTCTCTCTGAAGCGGGACCAATAAGCCAAGGACTTTGTGCCTCAGAACATCTGCGCCATGACTCTTAACATTTGAGTTTTCAAATGCTGTCAATGGAACTGAATTATAATCTCTGAAGGACTTCTGTGAAGGAAAAGATTTTTGTGTGCTTTCTTTTTAACATTATACAGTACAGCACTTTCAGTGAGAAACAGATTACTCTTTCACTAAATCTTTATATAATGCATGCCTATTTAGATGAGCAGAACTGTTGAAATTATTTACTCCAATATTCAAACTTTTCTTATTTTAAACCAAAATATTCCGAGGCTCATGGAAAACTGTCAAGAAAGGACATTAACAAAATTTTTTAATTGTGTTTTTCTCAAGATGTTCATCAGCCATCTTTTTTTAAAATCAAGCACATTTTTAGTAAAAGAAATTTTGAAAAAATCTGCATATATGCCAACACGTGTGCTGATTACATACGCAGCCTCATACTGTCATTGCTTTCTGGTCCACTAGATACTATGGCACATCTTACACTGTGTATATATACAAAATGTTTACATGATGCAGCATGCACAGCCTTGAAGAAATGTACAATCGTACGCACAAGAAGAGACTGTTTTTCTTATTGAATACTAAGTTAAGCTTACACCCTTTAAATGTAGCTTTATAGAGTAGCTTTTATATGTAGCTTTATATACTGTATTATCCTTTAATTGACTGTTTAATGGAACAGTAATGTTTTTATTAAACAGTCATGATTGTTGATCTTATAATACAGGCTATATATGTTGCATTGATTTCTCAGTAGTTTGTGGCCTGATGCTTTAGCATGTTTTGCCTTATATATGCTGCCATAAACTGTAGCTGCTGTTGCTTTCTGGATGACTACCTCTTATGATGCATCTTATGATATACTGTATACATATAGACATATATAATAAA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K16861 PLD5; inactive phospholipase D5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142274 lncRNA downstream 55805 6885162 ~ 6888157 (-) True G125315
TU142309 lncRNA downstream 61967 6881747 ~ 6881995 (-) True G125348
TU142305 lncRNA downstream 91067 6852600 ~ 6852895 (-) True G125344
TU142266 lncRNA downstream 167294 6776452 ~ 6776668 (-) True G125312
TU142263 lncRNA downstream 179071 6764188 ~ 6764891 (-) True G125309
TU142316 lncRNA upstream 9579 6965350 ~ 6965589 (-) True G125355
TU142317 lncRNA upstream 10014 6965785 ~ 6965996 (-) True G125356
TU142279 lncRNA upstream 27858 6983629 ~ 6985603 (-) True G125318
TU142338 lncRNA upstream 73919 7029690 ~ 7031113 (-) True G125374
TU142344 lncRNA upstream 86628 7042399 ~ 7042692 (-) False G125379
CI01000024_06909681_06921880.mRNA mRNA downstream 22082 6909322 ~ 6921880 (-) True CI01000024_06909681_06921880
CI01000024_06889558_06901776.mRNA mRNA downstream 41461 6889447 ~ 6902501 (-) True CI01000024_06889558_06901776
CI01000024_06867041_06878399.mRNA mRNA downstream 65149 6867041 ~ 6878813 (-) True CI01000024_06867041_06878399
CI01000024_06451305_06495178.mRNA mRNA downstream 445532 6451112 ~ 6498430 (-) False CI01000024_06451305_06495178
CI01000024_05986174_06002425.mRNA mRNA downstream 941153 5985732 ~ 6002809 (-) True CI01000024_05986174_06002425
CI01000024_06987928_07001260.mRNA mRNA upstream 31685 6987456 ~ 7001358 (-) True CI01000024_06987928_07001260
CI01000024_07117698_07119483.mRNA mRNA upstream 161345 7117116 ~ 7120003 (-) True CI01000024_07117698_07119483
CI01000024_07131727_07169937.mRNA mRNA upstream 175242 7131013 ~ 7169937 (-) True CI01000024_07131727_07169937
CI01000024_07239312_07251354.mRNA mRNA upstream 281771 7237542 ~ 7251865 (-) True CI01000024_07239312_07251354
CI01000024_07293038_07298458.mRNA mRNA upstream 337078 7292849 ~ 7298458 (-) True CI01000024_07293038_07298458
TU140468 other downstream 3002038 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 4388926 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 6117111 823733 ~ 826851 (-) True G121380
TU142441 other upstream 401466 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 401934 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 401983 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 1019896 7975667 ~ 7976047 (-) False G125798

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063409 False 2279 mRNA 0.46 10 NC_007117.7 6394641 ~ 6423885 (-)