RNA id: TU139938


Basic Information

Item Value
RNA id TU139938
length 231
lncRNA type intronic
GC content 0.32
exon number 1
gene id G123235
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2556554 ~ 2556784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAGATGTAAGTAGCTTACAAATCAATTAATTTTAACCTTTAATATTATAACAATGTACCAACTGTCGTTCCCTGTATAGTTTACAGCATTAGTTGAGAGATTTTTTTCTTTGAGGAAATTTGCCATGTACTGTTCCTGATAGGCCCCAAATTAATCAATTTTGAATCGAAGGTTCAAAATCGCAAGATTCTGAATCAAATTAAAATCTAATTTGTGTCAATGCCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139924 lncRNA downstream 14451 2539014 ~ 2542103 (-) True G123225
TU139931 lncRNA downstream 18470 2535337 ~ 2538084 (-) True G123229
TU139934 lncRNA downstream 26248 2530051 ~ 2530306 (-) True G123232
TU139932 lncRNA downstream 27335 2528288 ~ 2529219 (-) True G123230
TU139921 lncRNA downstream 32593 2523688 ~ 2523961 (-) True G123223
TU139953 lncRNA upstream 23381 2580165 ~ 2580472 (-) False G123247
TU139954 lncRNA upstream 23381 2580165 ~ 2580507 (-) True G123247
TU139963 lncRNA upstream 67811 2624595 ~ 2624835 (-) True G123256
TU139947 lncRNA upstream 93066 2649850 ~ 2693018 (-) True G123243
TU140031 lncRNA upstream 221674 2778458 ~ 2779425 (-) True G123324
CI01000024_02484606_02498687.mRNA mRNA downstream 57368 2484209 ~ 2499186 (-) False CI01000024_02484606_02498687
CI01000024_02421600_02456292.mRNA mRNA downstream 100262 2421600 ~ 2456292 (-) True CI01000024_02421600_02456292
CI01000024_02402657_02417463.mRNA mRNA downstream 138493 2402413 ~ 2418061 (-) True CI01000024_02402657_02417463
CI01000024_02249593_02250941.mRNA mRNA downstream 305460 2249593 ~ 2251094 (-) True CI01000024_02249593_02250941
CI01000024_02170481_02175158.mRNA mRNA downstream 381396 2169743 ~ 2175158 (-) True CI01000024_02170481_02175158
CI01000024_02597194_02605289.mRNA mRNA upstream 39967 2596751 ~ 2605289 (-) True CI01000024_02597194_02605289
CI01000024_02659912_02681156.mRNA mRNA upstream 102876 2659660 ~ 2684099 (-) False CI01000024_02659912_02681156
CI01000024_02712596_02739960.mRNA mRNA upstream 155089 2711873 ~ 2739960 (-) True CI01000024_02712596_02739960
CI01000024_02761265_02771248.mRNA mRNA upstream 204068 2760852 ~ 2771248 (-) True CI01000024_02761265_02771248
CI01000024_02771915_02777060.mRNA mRNA upstream 215022 2771806 ~ 2777060 (-) True CI01000024_02771915_02777060
TU139935 other downstream 1518 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 1729703 823733 ~ 826851 (-) True G121380
TU140468 other upstream 1379258 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 4800453 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 4800921 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 4800970 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 5418883 7975667 ~ 7976047 (-) False G125798

Expression Profile