RNA id: TU140031


Basic Information

Item Value
RNA id TU140031
length 968
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G123324
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2778458 ~ 2779425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAACGTAAACAAACGCCTAACAAATGAAAAGATCTTCATCTCGGTTTTCCTCTCAATGCAGATAAAGCGCAGTTCCCATAAAAGCTCTCGAGCTAAATATATACTGTAGATACCTGTGAGCTGCACTGATCCTGCCTAGAGACAGAGCTGTATCACTTTCCCCTCATATTCAACAGCAAATATAACTTTATTTGCAACATGAAACCTACCAAAAGCAAATATAGTAAGTTTCCGCTGGAAAGCCAAACAATTCACATACAAAACTTGTACTTTTCACCCCAAATGCAAACTCTAAATAAATACCCAAAAACTGTATATATTAACAAGTTTCTTTCTTTCTTTCTTTCTTTTTTCTTCTTCTTTTTTTAAAAAGCGCAAACCTTCCAGCTGCGGAATATCGTTCTGAATCTGGGAACCATTGCAAATGAACGAGGTACAGTGTTTAATCCTAATTTTGTCCATTATCACTAAATAATATGATATTCCTATAATATTCAGCACAGTGGCTCGTGAGACAGTTAGGCACTGATGTGCAGACAAATAGATTCGGCCTGATTAGTTCCAACAAGTTTTGTAATAAGACACTGTACAAGAACAATAGGAGTGACTGCGATATCTGTGGCTAGCCGAAATGAAAGGAAAGAAAAAACACCTAATTAAATGTAATAGCTGATGTAATTACAGACATAAAAATATCAAAGGAGCATTCAAATTCAAAACAAGACTATGTAAAGTTACTGCTAATGTTAGCACTTACCTTTGCTCGTCCGGCCTCTAATTTTCTCTGCCTTTCATCCTGATCCATCTCCTGGATCGAGGAGTTTCATAGGAATGAAAGAAACGCTCAAGCGGACGCCAAGCAGACTAAAACTGTGTTTCTGTAAAACTCTCCAAACGAATTTTTCGCAATGTTTTGTGAGTTCAGAGATTTTCCTAAGGAGTAACTGTCAATGTAATTTTCAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139947 lncRNA downstream 85440 2649850 ~ 2693018 (-) True G123243
TU139963 lncRNA downstream 153623 2624595 ~ 2624835 (-) True G123256
TU139954 lncRNA downstream 197951 2580165 ~ 2580507 (-) True G123247
TU139953 lncRNA downstream 197986 2580165 ~ 2580472 (-) False G123247
TU139938 lncRNA downstream 221674 2556554 ~ 2556784 (-) True G123235
TU140029 lncRNA upstream 2605 2782030 ~ 2782980 (-) True G123322
TU140041 lncRNA upstream 4246 2783671 ~ 2783972 (-) True G123334
TU140045 lncRNA upstream 8589 2788014 ~ 2788239 (-) True G123338
TU140046 lncRNA upstream 9491 2788916 ~ 2789147 (-) True G123339
TU140024 lncRNA upstream 10184 2789609 ~ 2789843 (-) True G123317
CI01000024_02771915_02777060.mRNA mRNA downstream 1398 2771806 ~ 2777060 (-) True CI01000024_02771915_02777060
CI01000024_02761265_02771248.mRNA mRNA downstream 7210 2760852 ~ 2771248 (-) True CI01000024_02761265_02771248
CI01000024_02712596_02739960.mRNA mRNA downstream 38498 2711873 ~ 2739960 (-) True CI01000024_02712596_02739960
CI01000024_02659912_02681156.mRNA mRNA downstream 94359 2659660 ~ 2684099 (-) False CI01000024_02659912_02681156
CI01000024_02597194_02605289.mRNA mRNA downstream 173169 2596751 ~ 2605289 (-) True CI01000024_02597194_02605289
CI01000024_02829108_02838763.mRNA mRNA upstream 49221 2828646 ~ 2839196 (-) True CI01000024_02829108_02838763
CI01000024_02849288_02866286.mRNA mRNA upstream 69675 2849100 ~ 2866404 (-) True CI01000024_02849288_02866286
CI01000024_02939122_02964449.mRNA mRNA upstream 158958 2938383 ~ 2964449 (-) False CI01000024_02939122_02964449
CI01000024_03048421_03049271.mRNA mRNA upstream 268739 3048164 ~ 3049529 (-) False CI01000024_03048421_03049271
CI01000024_03060967_03068650.mRNA mRNA upstream 281387 3060812 ~ 3069706 (-) True CI01000024_03060967_03068650
TU139935 other downstream 223422 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 1951607 823733 ~ 826851 (-) True G121380
TU140468 other upstream 1156617 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 4577812 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 4578280 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 4578329 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 5196242 7975667 ~ 7976047 (-) False G125798

Expression Profile