RNA id: TU140159


Basic Information

Item Value
RNA id TU140159
length 223
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G123447
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2970801 ~ 2971023 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATACTTTTTGCAACCTCCTTTTGCCAAGATAACAGCTCTGAGTCTTCACCTATAATGCCTGATGAGTTTGGAGAACACCTGACAAGAGATCAGAGACCATTCCTTCATGCAGAATCTCTACAGATCCTTCAGATTCCCAGCTCCATGTTGGTGCTTCTTCTCTTCAGTTCACTCCACTCATTTTCTTTAGGGTTCAGGTCAGGGGACTGGGATGGTCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140158 lncRNA downstream 79 2970515 ~ 2970722 (-) True G123446
TU140139 lncRNA downstream 14552 2955936 ~ 2956249 (-) True CI01000024_02939122_02964449
TU140151 lncRNA downstream 18027 2952536 ~ 2952774 (-) True G123439
TU140133 lncRNA downstream 25306 2945146 ~ 2945495 (-) False CI01000024_02939122_02964449
TU140020 lncRNA downstream 175979 2794420 ~ 2794822 (-) True G123313
TU140161 lncRNA upstream 7786 2978809 ~ 2979011 (-) True G123449
TU140173 lncRNA upstream 39005 3010028 ~ 3018735 (-) True G123459
TU140177 lncRNA upstream 55678 3026701 ~ 3028568 (-) True G123463
TU140180 lncRNA upstream 57576 3028599 ~ 3028884 (-) True G123465
TU140138 lncRNA upstream 67952 3038975 ~ 3039226 (-) True G123426
CI01000024_02939122_02964449.mRNA mRNA downstream 6352 2938383 ~ 2964449 (-) False CI01000024_02939122_02964449
CI01000024_02849288_02866286.mRNA mRNA downstream 104397 2849100 ~ 2866404 (-) True CI01000024_02849288_02866286
CI01000024_02829108_02838763.mRNA mRNA downstream 131605 2828646 ~ 2839196 (-) True CI01000024_02829108_02838763
CI01000024_02771915_02777060.mRNA mRNA downstream 193741 2771806 ~ 2777060 (-) True CI01000024_02771915_02777060
CI01000024_02761265_02771248.mRNA mRNA downstream 199553 2760852 ~ 2771248 (-) True CI01000024_02761265_02771248
CI01000024_03048421_03049271.mRNA mRNA upstream 77141 3048164 ~ 3049529 (-) False CI01000024_03048421_03049271
CI01000024_03060967_03068650.mRNA mRNA upstream 89789 3060812 ~ 3069706 (-) True CI01000024_03060967_03068650
CI01000024_03208565_03262749.mRNA mRNA upstream 237542 3208565 ~ 3262749 (-) True CI01000024_03208565_03262749
CI01000024_03284853_03286057.mRNA mRNA upstream 313187 3284210 ~ 3286057 (-) True CI01000024_03284853_03286057
CI01000024_03311028_03319956.mRNA mRNA upstream 339974 3310997 ~ 3319956 (-) True CI01000024_03311028_03319956
TU139935 other downstream 415765 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 2143950 823733 ~ 826851 (-) True G121380
TU140468 other upstream 965019 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 4386214 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 4386682 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 4386731 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 5004644 7975667 ~ 7976047 (-) False G125798

Expression Profile