RNA id: CI01000029_07388885_07402311.mRNA


Basic Information

Item Value
RNA id CI01000029_07388885_07402311.mRNA
length 2367
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000029_07388885_07402311
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7388244 ~ 7402678 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAATCCATGTTTGTTTACTGTTCAAGCAGATCTAATGCGCATGTACACGCCGATGTACTGCGCATGTGTGGAACACGTCCGCCGAGCGGACTAGTAAATACAAGTAGTCCGCGTCCGTGCTGTCCGTGTACGCGTCCGAACTGGAGTATTTAACCGAGGCTTTACACCCCTACCAGGTACCATGAATCATTTCATAAACGTCTGCCAACAACTATGTTGTTTACTTCACAACCGTATTATTTTAGTTTACAGTGTTAAACATATAATACGAACCAAATAGACACTAATGGAGAAAGGTTCGTGCTTGGGATTAAGAGGGAAAATGTTCTGCAGCTGTCAAGAATATTGATACTGGGAAAAAATCAATGACCAGAAAATACACAAAAACAAGTTCCTGTTTGTGTTTGTGTGCAGCGCTGTGCGTTCTGCCGGCGGTGCGAGCGGATGCTGACGATGCTTCACTGCTGGGCGGCTGGCAGGACGTGTGGCTCTTCCGCTTGTTCCTCAATGTTTTGGGCTACGCCACCATCATCATCCCTGGATATTTCCTAATCAGCTACTTCAAACGAATCAATTATCTAGAAACAGGTACACCCAAGTCTGTGGGTCGCAACAGGTCAAGTAGTGGCCGTGGGATTTGCTTTCCTCTCATAAAGACGTGTGTGTTTGGGAATGAATCTAAAACTGGACTGCTGGATGATGTTTCAACGGCGGCCAGAAACGACTCTGAATCCAGTTCATCAGCTCGACAGGCCTTCAAATTGATCTTCTGTGCTGCTGGACTCCAGGCGTCATACCTGACATGGGGCGTCCTTCAGGAGCGGGTGATGACGCGCTCCTACGGCGCCACGGAGGTGGAAGGCAGCGGCGAGCGCTTTAAAGATTCCCAGTTTCTGGTGTTCATGAACCGCATTCTGGCCTTGACGGTGTCTGGCCTGTGGTGCGTCCTGTTCAAACAGCCCCGCCATGGTGCGCCCATGTACAAATACTCCTTCGCTTCACTGTCGAACATCCTCAGCAGCTGGTGCCAGTATGAAGCGCTCAAATACATCAGCTTTCCCACGCAGGTGTTGGCCAAGGCCTCTAAGGTGATTCCCGTGATGCTGATGGGCAAGATTGTCTCGCACAAGAGCTACGAGTACTGGGAATACTTGACCGCCGTGCTGATCTCTGTGGGCGTCAGCATGTTCCTGCTGTCCAGCTCCACCGGCAAACATCCGTCCACCGTCACCACCTTCTCCGGCGTCATCATCCTCGGAGGATACATTGTGTTCGACAGCTTCACCTCCAACTGGCAGGACAACCTCTTCAAATACAAGATGTCGTCGGTGCAGATGATGTTCGGCGTGAATCTCTTCTCCTGCCTCTTCACGGTCGGCTCTCTGCTGGAACAGGGCGCCTTCTTCGACTCGCTCGCCTTCATGACGCGCCACTCCGAGTTCGCTTTCCACGCCGTGCTGCTGTCCGTCTGCTCCGCGTGCGGACAGCTTTTCATCTTCTACACCATCGCGCAGTTCGGCGCGGCCGTCTTCACCATCATCATGACTCTACGGCAGGCCATCGCCATCCTCCTGTCCTGCTTCCTCTACGGTCATGCCGTCACCATGGTGGGCGGCTTCGGGGTGGCCGTGGTCTTCCTCGCCCTTTTCCTCCGCGTCTACGCCCGCAGCCGCATGAAGAAGACCAGCAAGCGGGTGACGCAAACGCCGGTTCAGAAGGTCTAGATGAACAGCAGTCGTTCGGATGTGTACAGATGCCACATTTTCGTGGTTTAATTCGTCTTTTTTGTTTTCTGCAAAACTGTGGGTTTGTATTTTGTAAGGTCAAAAGGTACAGAAAGGGATTACGCTGTATTTCAAAGGGATTTTGGCTCGGCACTTGTGTCTTTGTGTGGGAAATGACTTCACGAGCCATCGAGAGAACACAGACTGGTCAGTGAGTGCTGAGCCTTTGATATCTTTGTAATTTGGTACTGAAATACGTTCGGTTTTTCTATTTAAAGTTTGCTTTAAGAAGTTGTCCGAGAGGAATACGAGATGTTGTTCCGGTAGAGATGCTTTAGGAGTGTCTGTGCCACTTGTCTACTTACCCATCCATCTGTTCTCATCATATTTGGGTCATATTTCACTACAAAAACAAATAGAATGTAATAATAAAATGTAGTAAACACACGATAGTGTAGCCTTTTTTCAAGAATCATTACCTTTTTTGCATTATCACATTATTTTCGTGAAAAATAAGTAGATTTTCTGCCCAAATCATCTTATTGTTATTAATATTATATTTTTATTATTTGTATTATTTTTTAAAAATATTTTATTATTATTATTAATACAATAATTGTCACCGTTTTAACATAAATAAT

Function

GO:

id name namespace
GO:0001503 ossification biological_process

KEGG:

id description
K15276 SLC35B2, PAPST1; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177688 lncRNA downstream 16323 7366327 ~ 7371921 (-) True G156495
TU177691 lncRNA downstream 18697 7365007 ~ 7369547 (-) False G156495
TU177687 lncRNA downstream 18697 7366327 ~ 7369547 (-) False G156495
TU177798 lncRNA downstream 57638 7330245 ~ 7330606 (-) True G156594
TU177792 lncRNA downstream 70699 7316066 ~ 7317545 (-) True G156588
TU177811 lncRNA upstream 44875 7447553 ~ 7447796 (-) True G156607
TU177704 lncRNA upstream 63193 7465871 ~ 7468189 (-) True CI01000029_07468989_07470230
TU177819 lncRNA upstream 84337 7487015 ~ 7487242 (-) True G156615
TU177705 lncRNA upstream 97657 7500335 ~ 7502988 (-) True G156507
TU177702 lncRNA upstream 101230 7503908 ~ 7514798 (-) True G156504
CI01000029_07346183_07362585.mRNA mRNA downstream 25659 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07332828_07336542.mRNA mRNA downstream 51702 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_06921800_06922750.mRNA mRNA downstream 465129 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_06832914_06833074.mRNA mRNA downstream 555170 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06798103_06806327.mRNA mRNA downstream 581398 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_07405933_07416452.mRNA mRNA upstream 2865 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07419676_07421496.mRNA mRNA upstream 16957 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
CI01000029_07435007_07443830.mRNA mRNA upstream 32262 7434940 ~ 7443830 (-) True CI01000029_07435007_07443830
CI01000029_07455468_07464461.mRNA mRNA upstream 52682 7455360 ~ 7464465 (-) True CI01000029_07455468_07464461
CI01000029_07468989_07470230.mRNA mRNA upstream 65274 7467952 ~ 7471489 (-) False CI01000029_07468989_07470230
TU177684 other downstream 18697 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 18697 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 217293 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2400819 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 2400819 4986185 ~ 4987425 (-) True G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036265 True 2804 mRNA 0.45 6 NC_007131.7 51238126 ~ 51267185 (-)