RNA id: CI01000029_08019292_08036434.mRNA



Basic Information


Item Value
RNA id CI01000029_08019292_08036434.mRNA
length 2139
RNA type mRNA
GC content 0.52
exon number 17
gene id CI01000029_08019292_08036434
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8019292 ~ 8036758 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTCATTCAGGCTTCTGTCAGTGTTGCTCGTGTTGTTCGTGGCTGAAGCTCTCGGCGCTGAACAAGAGAATGAAGTTCTCAAATACACAGACACACGGGACACCACAGAGCAGAATGAAGTAACATTCACCACTGGCAACTTGAGCGATACGTCACACAAACCTTCATTACCAGATATTGATGAGTGTCGCCAGGGCGACCCTGGGCCTTGCGGTTACCATGCCAACTGCACAAACACACCTGGATCCTTCCTGTGCAGCTGTGTTCGAGGTTACCTGATGAGTGCGGACGGATGTAAAGATGTAGACGAGTGTGTGTTAGCTGCCGTAACGGGTCTGCAGGCGTGTGGAAGTGGAGCCGAGTGTAAAAACACACCGGGATCTTTCACCTGCTCCTGTCCAGCGGGATTCGTGCTGGCGCTCGACGGACACAACTGTGTCGACATTGACGAGTGTAATTTCGAGGAGAGCTGCCGGAGGGAACTGGGTAACGTGTGTGTGAACACAGAAGGAAGCTACACGTGTGTGTGTCAGGCTGGATTCAGAGAGGACCGGGCCGCGTGTGTCGGTGGTCTGTGCCGAGGTTTTCTTATATGTGAAGATGTGGATGAGTGTGTGGAGGAGCAGCGCGTGTGTGTCGGTCGAGGGGAGTGTGAGAACACACTGGGCAGTTACAGGTGTGTGTGTCAGCACGGTTACCGTGGTAACGGCACACACTGCACAGACATAAACGAGTGTTTGACCGGGGATCACGGCTGTGACGCCAACGCTCGCTGCGGGAACATCATCGGCTCGTATTTCTGTCAGTGTCATCAGGGATACAGCGGAGACGGACACTCCTGCTACGATGTGGACGAGTGCGCTCAGGATAACGGACTCTGTGAACACGACTGCACAAACCAGCCGGGAACGTACAGCTGCCGCTGTAGCACCGGATACACAACCACTGCAGATGGACACAACTGTACAGACGTGACGTCGTGTGCGCTGAGGAACGGTGGATGTGATCATATCTGCTCTCTGGGGGCAGAAGGTCACGTCCACTGCAGCTGCAGGGCAGGATGGGAGCTGAACGCCGACCAAAGAACCTGTGACGATGTGGACGAGTGTGTGAGTTTTAGCGGCGGCTGTGAGCAGGTGTGTGTGAATCACGCTGGCGGTTTTAATTGCAGCTGTCGCTCGGGCTTTGAGTCGCGGAAAGACGACCCGACAAAATGTCAACCGGTGTGTGAACCTGCCTGTCAGAACTCTGGAGTGTGTGTCGCTCCGAACACCTGCGACTGTCCGGCCGGATACCCTGGACCGGGATGCTCGGCCGTGTGTGAGCTGCCATGCGGTAACGGTGGACGGTGCGTCGCTCCGAACACCTGCCAGTGTCCCTCAGACTACAGCGGGCCGCAGTGTCTCACCCCTCTGTGTTCTCCTCCGTGTGTGAACGGCGGGAGGTGTGTGGACATCAACACCTGCAGCTGCGCAGACGCATGGACAGGAGCTCGCTGTCAGATAGCTGTCACTACACCGTGTGTTCCTCCCTGCCAACATGGTGCTGCCTGCGGCCCTCTGAACACCTGTGTGTGTCCGACGGGGACGAGCGGCATACGCTGTGAGAAACTCACGTGTCCTGTCGTGACTACGGTGGTCAGTATGGCCCGCGCGGTGCGGAAAGGCTTTCGGGAGAGTTACGTGGACCGATGCGGACCCCTGGGAGTCCAACTCTGTACTAAATACAGGATAAACCAGGCGCGTGTGTATCTGCAGGCGTATAGAGTGGGATACAAGATCCAGTGTCCCGACAAAACCACAAGACAAGTCTAGTATACAATCAGACTAAATAAATTATCTTTATTGGCATCGATGGTTCCATGAAGAACCTTTAACATTCATGAAACATTTCCATTCTACAAAAGGTTCTTTAAAGGTTCTTTAGATTTTTTAAATGTCCTTCACATTAAGAAAAAAAAACAGTTCTTTTAAAAAACGATCACTGAAAGGTTCTTTGGGGAAGCAAAAATTATTATTTTATGGCATTGCTGCAAAAAACAAACAAAAAAGACAACAACGTGGAAGCTATATTTTTAGGAGCGTATGATTGTGTATATTGCCTTTTGCACATTGTGCATGTGTATTTTTTTCATACTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176764 lncRNA upstream 52766 7966287 ~ 7966526 (+) True G155683
TU176763 lncRNA upstream 55398 7963682 ~ 7963894 (+) True G155682
TU176712 lncRNA upstream 58132 7951604 ~ 7961160 (+) True G155632
TU176729 lncRNA upstream 75506 7942756 ~ 7943786 (+) True G155649
TU176728 lncRNA upstream 76811 7942267 ~ 7942481 (+) True G155648
TU176748 lncRNA downstream 23301 8060059 ~ 8063853 (+) True G155667
TU176755 lncRNA downstream 28942 8065700 ~ 8066608 (+) True G155674
TU176746 lncRNA downstream 47428 8084186 ~ 8092254 (+) True G155665
TU176770 lncRNA downstream 59065 8095823 ~ 8096101 (+) True G155689
TU176772 lncRNA downstream 61580 8098338 ~ 8098596 (+) True G155691
CI01000029_08007965_08016092.mRNA mRNA upstream 3143 8007055 ~ 8016149 (+) True CI01000029_08007965_08016092
CI01000029_07997857_08002279.mRNA mRNA upstream 16195 7997696 ~ 8003097 (+) True CI01000029_07997857_08002279
CI01000029_07933165_07944093.mRNA mRNA upstream 75199 7933165 ~ 7944093 (+) False CI01000029_07933165_07944093
CI01000029_07922221_07926151.mRNA mRNA upstream 91756 7922221 ~ 7927536 (+) True CI01000029_07922221_07926151
CI01000029_07885342_07908699.mRNA mRNA upstream 109500 7884282 ~ 7909792 (+) True CI01000029_07885342_07908699
CI01000029_08053844_08058278.mRNA mRNA downstream 17086 8053844 ~ 8058521 (+) True CI01000029_08053844_08058278
CI01000029_08072926_08079001.mRNA mRNA downstream 36168 8072926 ~ 8079112 (+) True CI01000029_08072926_08079001
CI01000029_08140259_08140582.mRNA mRNA downstream 103417 8140175 ~ 8140945 (+) True CI01000029_08140259_08140582
CI01000029_08156225_08174249.mRNA mRNA downstream 119156 8155914 ~ 8175136 (+) True CI01000029_08156225_08174249
CI01000029_08198433_08203489.mRNA mRNA downstream 161607 8198365 ~ 8203538 (+) True CI01000029_08198433_08203489
TU176707 other upstream 87115 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 381458 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1111860 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1528998 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 928060 8964818 ~ 9064541 (+) False G156007

Expression Profile