RNA id: CI01000029_08198433_08203489.mRNA



Basic Information


Item Value
RNA id CI01000029_08198433_08203489.mRNA
length 1380
RNA type mRNA
GC content 0.54
exon number 7
gene id CI01000029_08198433_08203489
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8198365 ~ 8203538 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAATAATACAGCATTATTGCACTATATTCCCACATTTTGATTTATACAGCTGGATCAAACTGAGGATGTCGGGAAGCTCCGGGAACGGGAAGCTGCGTCAGTGGCTGATCGAACAGGTGGACACTGGGAAATATCCCGGGTTAGTGTGGGAGGATCGAGAGCGAACCACCTTCCGCATCCCGTGGAAACACGCAGGGAAGCAGGACTATAACAGAGACGAGGACGCGGCGCTCTTCAAGGCCTGGGCTCTGTTTAAGGGGAAGTATCGTGAGGGAATAGATAAACCGGATCCACCCACCTGGAAAACGCGTCTCAGGTGCGCGCTGAACAAGAGCAGCGACTTTGAGGAGCTCGTGGGCCGAAGTCAGCTGGACGTTTCAGAGCCGTTTAAAGTTTACCGGGTTATCCCTGAGGGAACCAAAAGAGGACCAAAATCATATGAGAAAGTTTCCACAACCTCAGGTCATCATAACTACCCGTTTTATCCGTCATATCAACCGGTGGAGAGTCAGGTGTGTAACTTCCTGTCTGCTGCAGACCGTAGCTGGAGGGACTTCCTGTGTGAGCAGAACTCACTGTCAGACGTCCACTTCAGCCAGAACTCGCGCTGGGACACTGGGTACCAGATAAGTGGATCTTTTTACAGCTGTAACACATTTGATTCTCCTCCCTCACCGTTCACCCTGGAGACCAGCATGAGATCAGCAGAGGCCATGGCACTGTCAGACGCGCGTCTGCAGGTGACGGTGTTCAGCGGTGAGACTCTGGTCGCAGATGTCACCGTCACGAGCGCTGAGGGCTGTCGACTGGCTCCTCATGACGACAACTGGAGCTACAGTGGCCCGGGCGGCCCGGAGCTGGTGCCTCTTCCTGGAGCGCTGGAGGGGGGCATTCTGCTCTGGATGACGCCCGACGGCCTGTACGCCCGATGCTTCTGTCAGAGCCAGGTCTACTGCGACGGGACGCAATCAAACCTGAGCACCAAACTCTGTAAACTAGAGAGGGAGCAGACCAGCAAACTACTGGACACACAACTCTTCCTGACAGACAAGAGACCCCTGACAGTTCAGGTAGTGACCTTTGACCTCTCCATCCACACTGATGTGCAATGTTCACCTCCACACGACAAAACACAGCTCACTTCTCTTGTCCTGCAGGTGGAGCCGCTGTTCGCCCGGCAGCTGCTGCTCCTCCTCCAGCAGGGCGGCGTGAATTACATGAGAAGCACCCATGAACTTTCACCTCTGACCCCTGAGCAGATTTACACCCATCAAGATTTCCCTGCCATCAACGCACACCAGACGCATGGCAGCTTCATCCAAGAGTGACCCCGCAGGAGATACAAGACGTTTCTAGATTTTACTGTGTATTGGCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176779 lncRNA upstream 43447 8154717 ~ 8154918 (+) True G155698
TU176753 lncRNA upstream 70400 8124776 ~ 8127965 (+) True G155672
TU176772 lncRNA upstream 99769 8098338 ~ 8098596 (+) True G155691
TU176770 lncRNA upstream 102264 8095823 ~ 8096101 (+) True G155689
TU176746 lncRNA upstream 106111 8084186 ~ 8092254 (+) True G155665
TU176796 lncRNA downstream 10821 8214359 ~ 8226558 (+) True G155713
TU176820 lncRNA downstream 23598 8227136 ~ 8227451 (+) True G155731
TU176802 lncRNA downstream 25378 8228916 ~ 8231327 (+) False G155718
TU176804 lncRNA downstream 25378 8228916 ~ 8231327 (+) True G155718
TU176799 lncRNA downstream 32663 8236201 ~ 8237301 (+) True G155716
CI01000029_08156225_08174249.mRNA mRNA upstream 23229 8155914 ~ 8175136 (+) True CI01000029_08156225_08174249
CI01000029_08140259_08140582.mRNA mRNA upstream 57420 8140175 ~ 8140945 (+) True CI01000029_08140259_08140582
CI01000029_08072926_08079001.mRNA mRNA upstream 119253 8072926 ~ 8079112 (+) True CI01000029_08072926_08079001
CI01000029_08053844_08058278.mRNA mRNA upstream 139844 8053844 ~ 8058521 (+) True CI01000029_08053844_08058278
CI01000029_08019292_08036434.mRNA mRNA upstream 161607 8019292 ~ 8036758 (+) True CI01000029_08019292_08036434
CI01000029_08288440_08301175.mRNA mRNA downstream 84902 8288440 ~ 8301357 (+) True CI01000029_08288440_08301175
CI01000029_08318488_08338631.mRNA mRNA downstream 114950 8318488 ~ 8339359 (+) True CI01000029_08318488_08338631
CI01000029_08346604_08357224.mRNA mRNA downstream 142863 8346401 ~ 8357633 (+) True CI01000029_08346604_08357224
CI01000029_08367350_08368348.mRNA mRNA downstream 162806 8366344 ~ 8368514 (+) True CI01000029_08367350_08368348
CI01000029_08425310_08441838.mRNA mRNA downstream 220259 8423797 ~ 8441847 (+) True CI01000029_08425310_08441838
TU176707 other upstream 266188 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 560531 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1290933 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1708071 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 761280 8964818 ~ 9064541 (+) False G156007

Expression Profile