RNA id: CI01000029_08288440_08301175.mRNA



Basic Information


Item Value
RNA id CI01000029_08288440_08301175.mRNA
length 1037
RNA type mRNA
GC content 0.43
exon number 7
gene id CI01000029_08288440_08301175
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8288440 ~ 8301357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCCCCTGACAGCCACTGTGATTGGAGGAGTTCAGAAACTGGTGCTTTACGAGACCAGAGCTTCAGTGCAGTACAGTGTGAATCTATTGGGTTTCTTTAATATTATGCTGTATTTTACCCATCTTTTCACCATTAAAGCACAGAACAGGACAGACTGGACTATTTATGATCGCAGCTGCACATTCATAGACTATAATAACGGTCAGCGCTGCACTAATAGGTATTTTCTTGTGGGGAGTAATAACGCTCAAACTAAACATCGCGTCCTGAAGATCGATCGCACTGAACCACGAGATCTGGTCATTATTGATGATAAGCATGTCTACAGTCAGCAGGAAGTGCGGGAGCTGCTGGGCCGCCTGGATCTGGGCAATCGCACTAAGATCGGGCAGAAGGGATCCTCCGGTCTTTCCAGAGCCGTATCTGCCTACGGCATTGTGGGTTTTGTGCGGTTTCTGGAGGGTTACTATATCGTGTTGATCACGAAACGTCGTAAAATGGCTGACATCGGTGGCCACTCGATTTATAAGATTGAAGACACGAATATGATCTACATTCCCAATGACTCTGTGAGAGTCACACACCCTGATGAGGCCCGATATGTGAGAATATTCCAGAATGTGGATCTGTCCAGTAACTTCTACTTCAGTCAAACTTTGTTTTGTTTGTCTTGTATTGTGTGTGAATTGTTAATTGAGGTGTTTGTTTCAGTTGTTTACGGCTTCAGTAACGAACCCTACGCTAAGTATGTGTGGAACGTCCGTCTGCTGGAGAAAGTCAAGGACATCGTGCATCCTGATTGGCTGTTGTACATCATTCACGGATTCTGCGGCCAATCCAGTATCCTCTTATAAATTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTAACTCCAGAAGTGAGCTAAATGTTTTTAGTATTTTATTCTAAAATTCCCCCCAAAAAATTATTCTAGAGTTTGTGTTAGTCTCTGGTCTTTAACATTTAGCTTTATTTAAAAAATATGCAGTAAAAGTGTTGGGATATGTAGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176807 lncRNA upstream 39727 8248489 ~ 8248713 (+) True G155720
TU176813 lncRNA upstream 42950 8244999 ~ 8245490 (+) True G155725
TU176811 lncRNA upstream 45635 8242311 ~ 8242805 (+) True G155723
TU176812 lncRNA upstream 46812 8241175 ~ 8241628 (+) True G155724
TU176810 lncRNA upstream 47781 8240376 ~ 8240659 (+) True G155722
TU176843 lncRNA downstream 72677 8374034 ~ 8374329 (+) True G155753
TU176847 lncRNA downstream 76714 8378071 ~ 8378290 (+) True G155757
TU176848 lncRNA downstream 80228 8381585 ~ 8381784 (+) True G155758
TU176859 lncRNA downstream 81511 8382868 ~ 8384341 (+) True G155769
TU176904 lncRNA downstream 140783 8442140 ~ 8442351 (+) True G155809
CI01000029_08198433_08203489.mRNA mRNA upstream 84902 8198365 ~ 8203538 (+) True CI01000029_08198433_08203489
CI01000029_08156225_08174249.mRNA mRNA upstream 113304 8155914 ~ 8175136 (+) True CI01000029_08156225_08174249
CI01000029_08140259_08140582.mRNA mRNA upstream 147495 8140175 ~ 8140945 (+) True CI01000029_08140259_08140582
CI01000029_08072926_08079001.mRNA mRNA upstream 209328 8072926 ~ 8079112 (+) True CI01000029_08072926_08079001
CI01000029_08053844_08058278.mRNA mRNA upstream 229919 8053844 ~ 8058521 (+) True CI01000029_08053844_08058278
CI01000029_08318488_08338631.mRNA mRNA downstream 17131 8318488 ~ 8339359 (+) True CI01000029_08318488_08338631
CI01000029_08346604_08357224.mRNA mRNA downstream 45044 8346401 ~ 8357633 (+) True CI01000029_08346604_08357224
CI01000029_08367350_08368348.mRNA mRNA downstream 64987 8366344 ~ 8368514 (+) True CI01000029_08367350_08368348
CI01000029_08425310_08441838.mRNA mRNA downstream 122440 8423797 ~ 8441847 (+) True CI01000029_08425310_08441838
CI01000029_08443106_08447917.mRNA mRNA downstream 141601 8442958 ~ 8447917 (+) True CI01000029_08443106_08447917
TU176707 other upstream 356263 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 650606 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1381008 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1798146 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 663461 8964818 ~ 9064541 (+) False G156007

Expression Profile