RNA id: CI01000029_09256349_09260500.mRNA


Basic Information

Item Value
RNA id CI01000029_09256349_09260500.mRNA
length 4628
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01000029_09256349_09260500
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9255954 ~ 9262369 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGAGCCCTCGAGAACATCAGCGGATCCTCATTAGCATACTTTAATATTCACACAAATAACAGACATGAACTTTAGTGACTCTGGTCAGCGTTTAAATGCTACTTGTTTCAGTTGAAGTGGGCGCGTAACTGAAAGGTTGTAGGTTCGAACCCTGCAAGGTTTGCTCAATGTTGTTATTTCACAGATCAAGACACTGACACGAATACTTATTTACCTTCATGCTGTTATGCTGCACAGAATGGTGTTTTGAACAACATCTCAGGTGTTTATTGTTTCAGACAAGAAAAGCGAATGGGAATAAACAGAAATGATCAATAAAGCATCATAACACCATATGACCTGTGCACTGTATCTGGAGTCATGTGATGCTTTGTGTGATGAACACACTGAAATTTAATTATCACTGATTATCTTTAACTCTGCCGAAACTCTGAACTCTTATTCAGTCTAGGTACATGTATTCAATATTATTATTATTATTATTATTATTATTATTATTATATTTGTTTCTCTTTTTTTGGAAACGTGACAGCTGTGCTCATTGCAAACTGTCATTGTAGGAAAAACGGGAAAATATTCATATTTTTTACTTTTGTGTTTCCACTGAGGAAATAACAGCAAACAGGTCTGGAACGAGAAGTCATTATTTTCGCACAGGCGCTCAAAAGTTTGGAATAATTAATTTTCTTTAACATTTCTGAAAGAGTCTCTTCTGCTCATCAAAGCTGCATTTATTTGATCAAAAATACAGTAAAAACAGTGAAATATTATTCCAATGTAAATCAGCTGTTTTCTATGTGAATATATAGTAAAGTGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTGATATGATGATTTGATGATCAAGAAACATTTATGATTATTATCAATGTTGAAAAGAGTTGTATGTTTGTGGAAACTGTGATACATTTTATTTTTCAGGATTCTTTGATGAATATAAAGTTCAAAAGAACAGCATTTATTTTAAACAGAATCTTTTGTAACATTATAAATGTCTTTACTGTCACTTTTGATCAATTTAATCTGTCCTTGATGATGAAAAGTGTTAATTTTACTGACCCCTAACTGTTGAATGGTAGTATATAAATATGAAGCAGAACAACTGTGTTCAACATTGGTAATAATCAGAAATGTTTCAGAAGTCAAATAAATGCGGCGAACGCATACGAGTCAAATGAAGTATACTTTGCAAGGCTGTGCATTTGACACTAGCGTACACGTAAAACAACCCACGTAAAACTGTGTAAAAAGTATACCCAGAGCTTTACACACACCACTTAAACCTAAAATAATAATTCATAAAGTTCTAAAAGGTTGAAGTGAATTACAAGAGTGTTCGCAGTGGGCTGTGTTTACATTAATCTGGCGTCATAAAAGCATTCAGAGCCGAGGTGTATTTAACCTGACGTGACTCAGCCGAACGCCCGATCGCTCTCCAGCGCTCTTCTTCGTGAGCATTTGAGTGTGCGGTTAAAAACTAGCCTAGAGCGCCATCTGCTGTTAAAACTAAGATCAGAATTGATTCGAGAGAGAAAATATTAGAATCAGTACAGAATCATTGTATCGTGAATCGAGAATTGGTGTATTGTCCCAGTCACACAGGTTTGAACGGCATGAGGAAGAGTAAATTATGACAGAATGAACTTTTAACCGCTGACTGTTCACAGCTATACTCAGATCTGGTATTTGGTTTTTCTTCTTACTAAAAGCAGTGATTCCTCTCTTGTTCTTGAATATTGTTATATTTAATTGAGATCCCGTTTATCCCGTAGGTCTTCTCAGGAAGCATGTGATGACCCACGCTCGGAAAAAAGGTTCCCTAGGCCAGTATCGTGGTGAGGGGCGGGACCATGTAGAGGGCTGGTCACATGGTGAAACTGTGGGCGGAGCCTGGCCTGCGCAAGAGGGCAAGGCAAGGAAAGACATGGCGAAGAAAGTCAAGACCAGGAATCCAGAGCACATGGAGACCAGTGTTCAGTCTGACAGAAAGAGTCAAAAACGTTCAATGAGAACGGATGAAACCAAGAGAGGAAAGCCCAAGAGGGTTACGAGGAAGCTCTACCCGTTACGAGGAAGGGCCGTCGCTTCAGACAGCGAGGCCTTGAGCTGTCATGTTCTGCTCACTCGTCTGGATGACCAGGAGGAAGAGAGCAAGGTGTGTGAGGTGGATCCCAACAAGGAAACACCAAAATCCCAGAAGAAAAGCAGGAAGTCATTGCAGGAACGCACCCAAACAGATAAACCTCCAGCTCAGGAGCCGCGTAAACGTAGACTAGCCTCTCTCAACGCCGAGGCGGTCAACAGCCTGCTGCTTGAGAAAGCCGACGGACCGTCGGGTGCCAAACTTGCGAAGAAACAAGGCGATGGCACCTCCACTACAGTACAAACAAAGACCTGCTCCAACCCGAAGAAAAGAGCCTCAAAGTCAGAGACGTGCCAAAACCCCAAGCAGGTGAAGACCGACAAGTCGGAGGACGCTGGAACGAGTTTGTACGCTCCCGCTCCCAGACGCTTGGCCGGACTCAACGCCGCCGCGCTGCTCAAGCTCACCAGCTCCACTACAGCAAACAAGCAGAGGATTAAATCGGACAGTAAGAGTGTTTGTGCGTCTGGGAAGCAAGCGGTCCGCTGCAAACCCAAAGCGCAGACGTCCAAGAAGCACAGCCGCAAGCCGGAAGGTGCTTGTGAAGTGTGCAAAAGCCGGAGCTTCGAGTCTTCTCCGGAGAGCCGCCAGGTGTCTAAATCCCGCTACCAGTCACGGAGCATTCTGGGATATCCCATGAAGATAGTGAAGGAGGAGCAGGTGGAATCGGAGCTGAGTCCATACTGCTGCTGTCCGCCGGAGGGTTCGGTGGAGTATTGCCACCGGTTGGCGCTCTTCCTCGGGCAGGAGGCATACGGCGAGGCGGAGGAGACGCCGGTCAAGCATGAGTGCCTGGTTCCGGCGCATCCGGCCCTGACACTCAGCGCCCATCCGTGCCTATGTGCAGATCCGTGCTACTCTGGTTACTACGTCCACATCGCTCATGCCGGACCGCCGGCGGCAAGTCTGAGCGCTCAGGCGCTGCCCTGCACACACAGTCCCTTCTGTCCGCGCGGACTCTCCGGATCCAAGCTGCTGACCTCCTCAGGTATCCCACATCCCGCCTTCTGCGGGTCGGTCGGGTCGGGCTGCTACCGCCAGACCTGTGGAGTCGGCAGATACGCCTTCAGCGCTGTGCAGCCGGTTGCTAGTAGGACGTGCTCCTTCCCCACCAGCTGCTCCAACTGCAGCCATCCAATCAAAACAGAAGGCTTCTCCTCATCTCAAGATGAGCACAGTCGTGCGCACCTCGTTCCTCCGGCCCTGCCGCTCTCCGGATGTCCCAGCATACCCCGAGTGAACCCGTCCTCCCCGCGTCTTCTGTCCTCGATGTCTGACCAAAGGCAGGCAGAAGTCAGGCTGAAGGTGGGCAAAGAATGCCCTCAAAACACCAAGCCATCCAACAGCTCACTCACTATGGGCCACACCAGGTTATCCAAACAACCCACAGCTACTCCAGCAAGTGCCAAACACCAGAGGAAAGTCAGCCGGCGCCAGGCCACGAACGGATGGCGTCCTGTCGGCGTCCCGACGGAGAAGGAGGTGTTTATTGCGGGCGATGACGAGACGGTTCTCCGTCAGTGTTATGAAGGAGTGGAGCGTGACGGAGAAGTGATCAGGGTACGAGACACGGTGCTCCTACGATCTGGACCGCGGAAGAAATCCCTGCCGTACGTGGCCAAGATCTCTGCTCTGTGGGAAGATCCTAGAACAGGAGAGCTGATGATGAGCCTATTTTGGTACTATCGACCCGAGCACACGCAAGGAGGCAGAGATCCCAGCATGCACTGTGAGAACGAGATCTTCGCCTCTCGACATCAGGATGAAAACAGTGTGGCCTGCATTGAGGACCGATGCTATGTCCTGCCGTTAGCGCAGTACTGTAGATTTTGTGCCTTGGTCAAGCGGCGCTCGGAGGGCATGTCCGAAAGCACCCCGGTGGTGCCCGGCTCCTCTGACAGCGCCGTCCCGCCCCACCGCCTCGTGCCCGATGGTGTCAACCCAGAGCTGGTGTACCTGTGCCGCCACGTCTACGACTTCCGCTACGGACGCATCCTAAAGAACCCGCAGTAAAACTGTAAGTCTGTTCGGTGCAGCGGAAGCAGTTCCCACCGATGACAGCGTCCGTTCAGCGCTGATGGAGGTTGAGCACATGACCAACAGGACACGACTGAGAAACGAGCCGGTTGACCTGTCCACGTCGCTGGTCTTGATGTCCAGTTGAGACTACGATAGATTAATTGCCTTCTTCAGAACCTCACTTTGTATATCAGCTCGCTAAAGGTGTGTTCTATTCTTTGTCTTTTACACTGGACTGTCACACTGCTGAGGGCTGATGGGAGAATCTCTGAAGGGTCCAGAACGCTGACGGTTTTATAACATATCTCCTTTAGTTAAGTGTGGCGTCAAGACCAGACTGAGACTAGACCCTCTGAGGCCCAGACCCAGACCAAGAGACCCAGACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178289 lncRNA downstream 11418 9244327 ~ 9244536 (-) True G157028
TU178288 lncRNA downstream 13877 9241829 ~ 9242077 (-) True G157027
TU178287 lncRNA downstream 52248 9203351 ~ 9203706 (-) True G157026
TU178270 lncRNA downstream 100292 9152396 ~ 9155662 (-) True G157014
TU178266 lncRNA downstream 133519 9122211 ~ 9122435 (-) True G157013
TU178307 lncRNA upstream 45163 9307532 ~ 9308634 (-) True G157043
TU178310 lncRNA upstream 60544 9322913 ~ 9325470 (-) True G157046
CI01000029_09241423_09246886.mRNA mRNA downstream 9068 9241294 ~ 9246886 (-) True CI01000029_09241423_09246886
CI01000029_09224569_09226329.mRNA mRNA downstream 29625 9224290 ~ 9226329 (-) True CI01000029_09224569_09226329
CI01000029_09218366_09222084.mRNA mRNA downstream 33870 9217814 ~ 9222084 (-) True CI01000029_09218366_09222084
CI01000029_09212269_09216732.mRNA mRNA downstream 39222 9210827 ~ 9216732 (-) True CI01000029_09212269_09216732
CI01000029_09173596_09181048.mRNA mRNA downstream 74813 9173205 ~ 9181141 (-) True CI01000029_09173596_09181048
CI01000029_09266806_09267723.mRNA mRNA upstream 3027 9265396 ~ 9267736 (-) True CI01000029_09266806_09267723
CI01000029_09300363_09303399.mRNA mRNA upstream 37893 9300262 ~ 9303399 (-) True CI01000029_09300363_09303399
CI01000029_09362545_09363909.mRNA mRNA upstream 99097 9361466 ~ 9364306 (-) True CI01000029_09362545_09363909
CI01000029_09371783_09394715.mRNA mRNA upstream 109414 9371783 ~ 9395151 (-) True CI01000029_09371783_09394715
CI01000029_09399992_09440921.mRNA mRNA upstream 137244 9399613 ~ 9440921 (-) True CI01000029_09399992_09440921
TU177684 other downstream 1886407 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1886407 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 2085003 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 4268529 4986108 ~ 4987425 (-) False G154415

Expression Profile