RNA id: TU178288


Basic Information

Item Value
RNA id TU178288
length 249
lncRNA type intronic
GC content 0.35
exon number 1
gene id G157027
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9241829 ~ 9242077 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCTCATACCAAAACATTAAATGATAATTATTCATTTAAAGGTTCACTATGTAACTTTTGTCTCTCTAGTGGTTAAAAACAAAACTGCATGCATTTTGCGGAAGAACATTGTTTTGGTTGTGCTTCGGCTCTCTGTGGATGAATATGATTATCATACTGCTCTTAAAACATTCACTGCTAGTTTAGATGGAAAGGATCTCAAGCTGACGATCTGAAGACGTTACTGTAGTTTTACCCATTAACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178287 lncRNA downstream 38123 9203351 ~ 9203706 (-) True G157026
TU178270 lncRNA downstream 86167 9152396 ~ 9155662 (-) True G157014
TU178266 lncRNA downstream 119394 9122211 ~ 9122435 (-) True G157013
TU178263 lncRNA downstream 134070 9107207 ~ 9107759 (-) True G157010
TU178260 lncRNA downstream 137028 9104459 ~ 9104801 (-) True G157007
TU178289 lncRNA upstream 2250 9244327 ~ 9244536 (-) True G157028
TU178307 lncRNA upstream 65455 9307532 ~ 9308634 (-) True G157043
TU178310 lncRNA upstream 80836 9322913 ~ 9325470 (-) True G157046
CI01000029_09224569_09226329.mRNA mRNA downstream 15500 9224290 ~ 9226329 (-) True CI01000029_09224569_09226329
CI01000029_09218366_09222084.mRNA mRNA downstream 19745 9217814 ~ 9222084 (-) True CI01000029_09218366_09222084
CI01000029_09212269_09216732.mRNA mRNA downstream 25097 9210827 ~ 9216732 (-) True CI01000029_09212269_09216732
CI01000029_09173596_09181048.mRNA mRNA downstream 60688 9173205 ~ 9181141 (-) True CI01000029_09173596_09181048
CI01000029_09114660_09118056.mRNA mRNA downstream 123501 9114554 ~ 9118328 (-) True CI01000029_09114660_09118056
CI01000029_09256349_09260500.mRNA mRNA upstream 13877 9255954 ~ 9262369 (-) True CI01000029_09256349_09260500
CI01000029_09266806_09267723.mRNA mRNA upstream 23319 9265396 ~ 9267736 (-) True CI01000029_09266806_09267723
CI01000029_09300363_09303399.mRNA mRNA upstream 58185 9300262 ~ 9303399 (-) True CI01000029_09300363_09303399
CI01000029_09362545_09363909.mRNA mRNA upstream 119389 9361466 ~ 9364306 (-) True CI01000029_09362545_09363909
CI01000029_09371783_09394715.mRNA mRNA upstream 129706 9371783 ~ 9395151 (-) True CI01000029_09371783_09394715
TU177684 other downstream 1872282 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1872282 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 2070878 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 4254404 4986108 ~ 4987425 (-) False G154415

Expression Profile