RNA id: TU176728


Basic Information

Item Value
RNA id TU176728
length 215
lncRNA type intronic
GC content 0.42
exon number 1
gene id G155648
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7942267 ~ 7942481 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGAAACAGGAAGTTGTTATAACTCAGGCATACAATGTCCGATCTGCTCCAAACTTCACATGTTTGATAATAGTCCTGGCCTGAAGACATCTACATGGCAATATTCAGTTATAATCAAAGCACCACATGTTGGCAGCTGGAAGTGTGGCACTTTGAAATGACTTTGCCATATTTACTCGCTTACACCCACTATTCACTGTTTTCCTAAGGCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176727 lncRNA upstream 418 7941644 ~ 7941849 (+) True G155647
TU176726 lncRNA upstream 902 7940887 ~ 7941365 (+) True G155646
TU176725 lncRNA upstream 1468 7939547 ~ 7940799 (+) True G155645
TU176724 lncRNA upstream 5346 7936629 ~ 7936921 (+) True G155644
TU176710 lncRNA upstream 5738 7933383 ~ 7936529 (+) True CI01000029_07933165_07944093
TU176729 lncRNA downstream 275 7942756 ~ 7943786 (+) True G155649
TU176712 lncRNA downstream 9123 7951604 ~ 7961160 (+) True G155632
TU176763 lncRNA downstream 21201 7963682 ~ 7963894 (+) True G155682
TU176764 lncRNA downstream 23806 7966287 ~ 7966526 (+) True G155683
TU176743 lncRNA downstream 27023 7969504 ~ 8047016 (+) True G155662
CI01000029_07922221_07926151.mRNA mRNA upstream 14731 7922221 ~ 7927536 (+) True CI01000029_07922221_07926151
CI01000029_07885342_07908699.mRNA mRNA upstream 32475 7884282 ~ 7909792 (+) True CI01000029_07885342_07908699
CI01000029_07672445_07687240.mRNA mRNA upstream 254394 7672445 ~ 7687873 (+) True CI01000029_07672445_07687240
CI01000029_07653640_07663101.mRNA mRNA upstream 279166 7653334 ~ 7663101 (+) True CI01000029_07653640_07663101
CI01000029_07643406_07651059.mRNA mRNA upstream 290886 7643406 ~ 7651381 (+) True CI01000029_07643406_07651059
CI01000029_07997857_08002279.mRNA mRNA downstream 55215 7997696 ~ 8003097 (+) True CI01000029_07997857_08002279
CI01000029_08007965_08016092.mRNA mRNA downstream 64574 8007055 ~ 8016149 (+) True CI01000029_08007965_08016092
CI01000029_08019292_08036434.mRNA mRNA downstream 76811 8019292 ~ 8036758 (+) True CI01000029_08019292_08036434
CI01000029_08053844_08058278.mRNA mRNA downstream 111363 8053844 ~ 8058521 (+) True CI01000029_08053844_08058278
CI01000029_08072926_08079001.mRNA mRNA downstream 130445 8072926 ~ 8079112 (+) True CI01000029_08072926_08079001
TU176707 other upstream 10090 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 304433 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1034835 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1451973 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 1022337 8964818 ~ 9064541 (+) False G156007

Expression Profile