RNA id: TU176725


Basic Information

Item Value
RNA id TU176725
length 347
lncRNA type intronic
GC content 0.41
exon number 3
gene id G155645
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7939547 ~ 7940799 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAGAATGAACCTCATTGGTTCTTGCTGAAGCTCAAACGTGCTGCGTAACACGAGAATGAACCTCATTGGTTCTTGCTGAATCTCAAACGTGATGCGTAACACGAGAATGAACCTCATTGGTTCTTGCTGAAGCTCAAACGTGCTGCGTAACACGAGAATGAACCTCATTGGTTCAAACATGCTGTGTAACGTGAACAAACCTCATTGGTTCTTGCTGAAGCTCAAACGTGCTGCGTAACACAAGAATGTAAACCTACTACAACAGGTTTACGTGTATCAAAGGTCAAAAAACACTTTCATTTTCTTATAATATACATTGCTCATCACCACATTTTTCAAACATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176724 lncRNA upstream 2626 7936629 ~ 7936921 (+) True G155644
TU176710 lncRNA upstream 3018 7933383 ~ 7936529 (+) True CI01000029_07933165_07944093
TU176700 lncRNA upstream 104083 7835244 ~ 7835464 (+) True G155620
TU176699 lncRNA upstream 104355 7834982 ~ 7835192 (+) True G155619
TU176695 lncRNA upstream 107456 7831634 ~ 7832091 (+) True G155615
TU176726 lncRNA downstream 88 7940887 ~ 7941365 (+) True G155646
TU176727 lncRNA downstream 845 7941644 ~ 7941849 (+) True G155647
TU176728 lncRNA downstream 1468 7942267 ~ 7942481 (+) True G155648
TU176729 lncRNA downstream 1957 7942756 ~ 7943786 (+) True G155649
TU176712 lncRNA downstream 10805 7951604 ~ 7961160 (+) True G155632
CI01000029_07922221_07926151.mRNA mRNA upstream 12011 7922221 ~ 7927536 (+) True CI01000029_07922221_07926151
CI01000029_07885342_07908699.mRNA mRNA upstream 29755 7884282 ~ 7909792 (+) True CI01000029_07885342_07908699
CI01000029_07672445_07687240.mRNA mRNA upstream 251674 7672445 ~ 7687873 (+) True CI01000029_07672445_07687240
CI01000029_07653640_07663101.mRNA mRNA upstream 276446 7653334 ~ 7663101 (+) True CI01000029_07653640_07663101
CI01000029_07643406_07651059.mRNA mRNA upstream 288166 7643406 ~ 7651381 (+) True CI01000029_07643406_07651059
CI01000029_07997857_08002279.mRNA mRNA downstream 56897 7997696 ~ 8003097 (+) True CI01000029_07997857_08002279
CI01000029_08007965_08016092.mRNA mRNA downstream 66256 8007055 ~ 8016149 (+) True CI01000029_08007965_08016092
CI01000029_08019292_08036434.mRNA mRNA downstream 78493 8019292 ~ 8036758 (+) True CI01000029_08019292_08036434
CI01000029_08053844_08058278.mRNA mRNA downstream 113045 8053844 ~ 8058521 (+) True CI01000029_08053844_08058278
CI01000029_08072926_08079001.mRNA mRNA downstream 132127 8072926 ~ 8079112 (+) True CI01000029_08072926_08079001
TU176707 other upstream 7370 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 301713 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1032115 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1449253 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 1024019 8964818 ~ 9064541 (+) False G156007

Expression Profile