RNA id: TU176700


Basic Information

Item Value
RNA id TU176700
length 221
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G155620
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7835244 ~ 7835464 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGGAACAACTGTTTTGATATATTTATAGACAGAACACTAAATATTGTTATATAGCTCAACACGTTTAGTCTTATTGCTTAAATCGAATTTTCTTGATATTTTGCGAGTACCATGCTTTACCATGCCTCAGAGAAAAACACTATTTTGTCGAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGAATTTTCTCCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176699 lncRNA upstream 52 7834982 ~ 7835192 (+) True G155619
TU176695 lncRNA upstream 3153 7831634 ~ 7832091 (+) True G155615
TU176693 lncRNA upstream 16894 7818140 ~ 7818350 (+) True G155613
TU176691 lncRNA upstream 18180 7816838 ~ 7817064 (+) True G155611
TU176643 lncRNA upstream 116026 7718903 ~ 7719218 (+) True G155563
TU176710 lncRNA downstream 97919 7933383 ~ 7936529 (+) True CI01000029_07933165_07944093
TU176724 lncRNA downstream 101165 7936629 ~ 7936921 (+) True G155644
TU176725 lncRNA downstream 104083 7939547 ~ 7940799 (+) True G155645
TU176726 lncRNA downstream 105423 7940887 ~ 7941365 (+) True G155646
TU176727 lncRNA downstream 106180 7941644 ~ 7941849 (+) True G155647
CI01000029_07672445_07687240.mRNA mRNA upstream 147371 7672445 ~ 7687873 (+) True CI01000029_07672445_07687240
CI01000029_07653640_07663101.mRNA mRNA upstream 172143 7653334 ~ 7663101 (+) True CI01000029_07653640_07663101
CI01000029_07643406_07651059.mRNA mRNA upstream 183863 7643406 ~ 7651381 (+) True CI01000029_07643406_07651059
CI01000029_07602986_07608307.mRNA mRNA upstream 226918 7602669 ~ 7608326 (+) True CI01000029_07602986_07608307
CI01000029_07540982_07543852.mRNA mRNA upstream 291349 7538942 ~ 7543895 (+) True CI01000029_07540982_07543852
CI01000029_07885342_07908699.mRNA mRNA downstream 48818 7884282 ~ 7909792 (+) True CI01000029_07885342_07908699
CI01000029_07922221_07926151.mRNA mRNA downstream 86757 7922221 ~ 7927536 (+) True CI01000029_07922221_07926151
CI01000029_07933165_07944093.mRNA mRNA downstream 97701 7933165 ~ 7944093 (+) False CI01000029_07933165_07944093
CI01000029_07997857_08002279.mRNA mRNA downstream 162232 7997696 ~ 8003097 (+) True CI01000029_07997857_08002279
CI01000029_08007965_08016092.mRNA mRNA downstream 171591 8007055 ~ 8016149 (+) True CI01000029_08007965_08016092
TU176602 other upstream 197410 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 927812 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1344950 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 1344950 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 1546846 6282685 ~ 6288398 (+) True G155079
TU176707 other downstream 96016 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 1129354 8964818 ~ 9064541 (+) False G156007

Expression Profile