RNA id: TU176643


Basic Information

Item Value
RNA id TU176643
length 316
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G155563
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7718903 ~ 7719218 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGATGATTTGATACTCAGTTATTATCAATGTTGAAAACAGTTGTGTTGCTTAATATTTTTTTGGAACCTGTGCTACTTTTTTCAGGATTCATTGATGGATAAAAGGTTAAAAAGAACAGCATTTATTCAAAATATAAATCTTTTCTAACAATATAAATCTTTACTATCACTTTTTATCAATTTAACACATCCGTGCTGAATAAAAGTATTAATTTCTTTCAAAAAAAAGAAAGAAAAAAAATTACTGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176641 lncRNA upstream 1745 7716464 ~ 7717158 (+) True G155561
TU176635 lncRNA upstream 14521 7704138 ~ 7704382 (+) True G155555
TU176597 lncRNA upstream 86190 7631715 ~ 7632713 (+) True G155518
TU176600 lncRNA upstream 107146 7611324 ~ 7611757 (+) True G155520
TU176579 lncRNA upstream 126933 7591009 ~ 7591970 (+) True G155506
TU176691 lncRNA downstream 97620 7816838 ~ 7817064 (+) True G155611
TU176693 lncRNA downstream 98922 7818140 ~ 7818350 (+) True G155613
TU176695 lncRNA downstream 112416 7831634 ~ 7832091 (+) True G155615
TU176699 lncRNA downstream 115764 7834982 ~ 7835192 (+) True G155619
TU176700 lncRNA downstream 116026 7835244 ~ 7835464 (+) True G155620
CI01000029_07672445_07687240.mRNA mRNA upstream 31030 7672445 ~ 7687873 (+) True CI01000029_07672445_07687240
CI01000029_07653640_07663101.mRNA mRNA upstream 55802 7653334 ~ 7663101 (+) True CI01000029_07653640_07663101
CI01000029_07643406_07651059.mRNA mRNA upstream 67522 7643406 ~ 7651381 (+) True CI01000029_07643406_07651059
CI01000029_07602986_07608307.mRNA mRNA upstream 110577 7602669 ~ 7608326 (+) True CI01000029_07602986_07608307
CI01000029_07540982_07543852.mRNA mRNA upstream 175008 7538942 ~ 7543895 (+) True CI01000029_07540982_07543852
CI01000029_07885342_07908699.mRNA mRNA downstream 165064 7884282 ~ 7909792 (+) True CI01000029_07885342_07908699
CI01000029_07922221_07926151.mRNA mRNA downstream 203003 7922221 ~ 7927536 (+) True CI01000029_07922221_07926151
CI01000029_07933165_07944093.mRNA mRNA downstream 213947 7933165 ~ 7944093 (+) False CI01000029_07933165_07944093
CI01000029_07997857_08002279.mRNA mRNA downstream 278478 7997696 ~ 8003097 (+) True CI01000029_07997857_08002279
CI01000029_08007965_08016092.mRNA mRNA downstream 287837 8007055 ~ 8016149 (+) True CI01000029_08007965_08016092
TU176602 other upstream 81069 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 811471 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1228609 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 1228609 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 1430505 6282685 ~ 6288398 (+) True G155079
TU176707 other downstream 212262 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 1245600 8964818 ~ 9064541 (+) False G156007

Expression Profile