RNA id: TU198477


Basic Information

Item Value
RNA id TU198477
length 242
lncRNA type intronic
GC content 0.50
exon number 2
gene id G174742
representative False

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 1035450 ~ 1035773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACACACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198465 lncRNA upstream 11963 1022442 ~ 1023487 (+) True G174731
TU198446 lncRNA upstream 53458 981701 ~ 981992 (+) True G174712
TU198443 lncRNA upstream 61162 973973 ~ 974288 (+) True G174709
TU198404 lncRNA upstream 183044 852144 ~ 852406 (+) True G174676
TU198403 lncRNA upstream 183968 849889 ~ 851482 (+) True G174675
TU198490 lncRNA downstream 3305 1039078 ~ 1073857 (+) True G174743
TU198544 lncRNA downstream 47667 1083440 ~ 1083737 (+) True G174776
TU198526 lncRNA downstream 48315 1084088 ~ 1087438 (+) True G174758
TU198561 lncRNA downstream 159302 1195075 ~ 1233465 (+) True G174789
TU198598 lncRNA downstream 201928 1237701 ~ 1237939 (+) True G174825
CI01000037_00987906_00988350.mRNA mRNA upstream 47078 987906 ~ 988372 (+) False CI01000037_00987906_00988350
CI01000037_00874555_00887437.mRNA mRNA upstream 147433 874487 ~ 888017 (+) True CI01000037_00874555_00887437
CI01000037_00808744_00809273.mRNA mRNA upstream 225577 808744 ~ 809873 (+) True CI01000037_00808744_00809273
CI01000037_00796721_00807196.mRNA mRNA upstream 228116 795352 ~ 807334 (+) True CI01000037_00796721_00807196
CI01000037_00784200_00785176.mRNA mRNA upstream 250274 783585 ~ 785176 (+) True CI01000037_00784200_00785176
CI01000037_01075201_01076456.mRNA mRNA downstream 38201 1073974 ~ 1076489 (+) True CI01000037_01075201_01076456
CI01000037_01098540_01104541.mRNA mRNA downstream 62299 1098072 ~ 1105186 (+) True CI01000037_01098540_01104541
CI01000037_01670886_01672687.mRNA mRNA downstream 635113 1670886 ~ 1673145 (+) False CI01000037_01670886_01672687
CI01000037_01674415_01677266.mRNA mRNA downstream 638320 1674093 ~ 1677305 (+) False CI01000037_01674415_01677266
CI01000037_01685225_01686624.mRNA mRNA downstream 649452 1685225 ~ 1686738 (+) True CI01000037_01685225_01686624
TU198421 other upstream 45691 989270 ~ 989759 (+) True G174689
TU198182 other upstream 805054 228982 ~ 229587 (+) True G174501
TU198741 other downstream 578103 1613876 ~ 1614274 (+) False G174949
TU198740 other downstream 578117 1613890 ~ 1614274 (+) False G174949
TU198758 other downstream 636567 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU199493 other downstream 929969 1970185 ~ 1970391 (+) True G175626
TU200317 other downstream 1803987 2839760 ~ 2840053 (+) True G176346

Expression Profile