RNA id: TU198421


Basic Information

Item Value
RNA id TU198421
length 490
RNA type TUCP
GC content 0.46
exon number 1
gene id G174689
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 989270 ~ 989759 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCTGTACAAAGTCTACAAACAACAATTTTTGAATGTTCTGACCAGTGCCGGGATCTCCATGTCTTTTGGTGTTGGCCTCCTGTCCCAGACAGACGAGGTAATACTATCACAGCTCTGCAGCAAAGCCAAAACAGGCCAGAGCTCCAAGGCACTTGGAAAAGAGTCAACAGAGTCCAATGAAAACCAAGCTGAATACACACAATCTCTCTCTCTTCATCGCTCTCTCTCCCAACAACTGAACAATCCATGTCTCCGGCTGCTTTCCGCACTCCCTAATAAGACAAGCCCCTCACCCCCCCGCTTACCCACAAGTCAACAGAACTCCCAGCGTGGCTCTGGGGAGCGAGAGGCCAGTCGAGGTACAATAAAGAAATTTACACACTCTTTCCCCATGCGCATACCCGTTCTATCGCTCTCTTCACCTCGAGGTGAAACGTTCTGTGAAATTCTCACCCTTCTCCCAGGCTTACACCAAACCTGGTCTTGTTAGCCTTCATTTTCAGCAGCCCAAAATAAACCATGGAGTAAACAGACAGGTGAAATGAAAGAAAGCAAGCGTAAGGCCTGACTCCTCCAAGGCCCCAGTGGCTTTAAACCCAAGGACTGGTGTTTCAAAATGGCTCTCCTCCAAAACAGTTTGCTTAAGGCTCGATTGTTTGTACATGAAAGTGGCTTGGGGATTTTCCAGCTCCTTCACCAAAGTCGCTCTGCCAGCTTGAGTCTTTGTTCCTTCGAGAATAGGGTAAAGAGAGAAGGAGAGAACAGAAGATGCTCTCACTCTCTTTCCACTCTCTTAACACTCTTTAGCTCAGTTGCTCTGAATCCTTAGCAATCCATAGGTTGCGATAAATAAGTTTGAAATTGTCAGCACAGGGTCTTTAACGCTATGCTTAGAAATCAAACAGTCAAAAGCAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAGACACAAAAGACAATCCTAATACTTCAATCTAAAAGGATTTTTTTCTGAATGTAATACAGCGTGTTTTCTTTCCTCACTGTCTAATGGCCACAACAAAAACATTATGCTACAAACAGACTGAACTTATGTATAAAACATTCATAAGAGGCGTTGACACTTCAAAACAGTTGTAGAAAGTGGCAAAAGACGGGATGGGATGGGAACTTAAGCAAGTCAGCAAAAAGACACGAGTCTAAACTAAAGCAAATGTCCACAATATTCTAGGCCACAGCGTTCACACAATAGAGGCCGAGATTTCACAAGCGGTCTGTCTTCTAGTCCTAGTGCCTCTCTCTCTCTCTTCTAACTTCCATTAAGCATTATTAGATTGTATTTTTCTTTACAAATCTATATCAATATACATTTCTTTAAAGTTCTTTTTCATTTTTGAAGGGGGGGGGGAGTCATTAGGTTGATATGTGTTGATCATGTTTCACTCCAGCTGAGCTGTCCACAGGAAGCCTCTACGCTCCCAGTGATCCTTCCACAATCCCGGTAAGAGATCAGCCCTATATTAGCGGCGCAAGGTCCATTCACAGTTTTGGATCAGGCTGGCACCAGTTCACGAGCGGACAGAGCGCCTCTCCCGATTGGCTTCCTTCAGGCCTCGGAGCAGCAGCGCTGTTGGTTGATCTTCACCTTGTGCTTGATGCCGTCGTACAGCTCGAAGTTGTAGTTCTCCAGTGTGGTGGTGCTGCGAGAGGACAGGCCGTTGTAGGAGCAGGTGCAGTAGAGCAGGAGACCGGCGCATACCGCCCCCAACAGAACACCTAGGGAACTCATGACGATGATGGTGACCAGGATAGGATCAAGGGTGTACAGCCAGGCGTTGTCTTTCTCTGAGAACCGTGTCACCGGAGGTTCTCGTGAGGGGTTGGGCGTGGTCCAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198446 lncRNA upstream 5867 981701 ~ 981992 (+) True G174712
TU198443 lncRNA upstream 13571 973973 ~ 974288 (+) True G174709
TU198404 lncRNA upstream 135453 852144 ~ 852406 (+) True G174676
TU198403 lncRNA upstream 136377 849889 ~ 851482 (+) True G174675
TU198402 lncRNA upstream 139216 848305 ~ 848643 (+) True G174674
TU198465 lncRNA downstream 32683 1022442 ~ 1023487 (+) True G174731
TU198477 lncRNA downstream 45691 1035450 ~ 1035773 (+) False G174742
TU198478 lncRNA downstream 45691 1035450 ~ 1035773 (+) False G174742
TU198479 lncRNA downstream 45691 1035450 ~ 1035773 (+) True G174742
TU198490 lncRNA downstream 49319 1039078 ~ 1073857 (+) True G174743
CI01000037_00874555_00887437.mRNA mRNA upstream 99842 874487 ~ 888017 (+) True CI01000037_00874555_00887437
CI01000037_00808744_00809273.mRNA mRNA upstream 177986 808744 ~ 809873 (+) True CI01000037_00808744_00809273
CI01000037_00796721_00807196.mRNA mRNA upstream 180525 795352 ~ 807334 (+) True CI01000037_00796721_00807196
CI01000037_00784200_00785176.mRNA mRNA upstream 202683 783585 ~ 785176 (+) True CI01000037_00784200_00785176
CI01000037_00775538_00779866.mRNA mRNA upstream 207772 775538 ~ 780087 (+) True CI01000037_00775538_00779866
CI01000037_01075201_01076456.mRNA mRNA downstream 84215 1073974 ~ 1076489 (+) True CI01000037_01075201_01076456
CI01000037_01098540_01104541.mRNA mRNA downstream 108313 1098072 ~ 1105186 (+) True CI01000037_01098540_01104541
CI01000037_01670886_01672687.mRNA mRNA downstream 681127 1670886 ~ 1673145 (+) False CI01000037_01670886_01672687
CI01000037_01674415_01677266.mRNA mRNA downstream 684334 1674093 ~ 1677305 (+) False CI01000037_01674415_01677266
CI01000037_01685225_01686624.mRNA mRNA downstream 695466 1685225 ~ 1686738 (+) True CI01000037_01685225_01686624
TU198182 other upstream 757463 228982 ~ 229587 (+) True G174501
TU198741 other downstream 624117 1613876 ~ 1614274 (+) False G174949
TU198740 other downstream 624131 1613890 ~ 1614274 (+) False G174949
TU198758 other downstream 682581 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU199493 other downstream 975983 1970185 ~ 1970391 (+) True G175626
TU200317 other downstream 1850001 2839760 ~ 2840053 (+) True G176346

Expression Profile