Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU207807 |
| length | 1851 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G182997 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000039 |
| NCBI id | null |
| chromosome length | 8355537 |
| location | 7354970 ~ 7356820 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU207933 | lncRNA | downstream | 6229 | 7348437 ~ 7348741 (-) | True | G183106 |
| TU207930 | lncRNA | downstream | 12005 | 7342676 ~ 7342965 (-) | True | G183103 |
| TU207927 | lncRNA | downstream | 18843 | 7335638 ~ 7336127 (-) | True | G183100 |
| TU207917 | lncRNA | downstream | 46233 | 7305494 ~ 7308737 (-) | True | G183091 |
| TU207913 | lncRNA | downstream | 54614 | 7295665 ~ 7300356 (-) | False | G183091 |
| TU207808 | lncRNA | upstream | 4116 | 7360936 ~ 7362149 (-) | True | G182998 |
| TU207948 | lncRNA | upstream | 70204 | 7427024 ~ 7428641 (-) | True | G183121 |
| TU207964 | lncRNA | upstream | 106301 | 7463121 ~ 7465190 (-) | True | G183135 |
| TU207969 | lncRNA | upstream | 124813 | 7481633 ~ 7481993 (-) | True | G183140 |
| TU207971 | lncRNA | upstream | 127757 | 7484577 ~ 7484808 (-) | True | G183142 |
| CI01000039_07320926_07323244.mRNA | mRNA | downstream | 30317 | 7320717 ~ 7324653 (-) | True | CI01000039_07320926_07323244 |
| CI01000039_07165860_07166458.mRNA | mRNA | downstream | 188512 | 7164783 ~ 7166458 (-) | True | CI01000039_07165860_07166458 |
| CI01000039_07141149_07162368.mRNA | mRNA | downstream | 192602 | 7140963 ~ 7162368 (-) | True | CI01000039_07141149_07162368 |
| CI01000039_07134422_07137732.mRNA | mRNA | downstream | 217238 | 7134422 ~ 7137732 (-) | False | CI01000039_07134422_07137732 |
| CI01000039_07006878_07015672.mRNA | mRNA | downstream | 338697 | 7006309 ~ 7016273 (-) | True | CI01000039_07006878_07015672 |
| CI01000039_07385848_07389331.mRNA | mRNA | upstream | 28009 | 7384829 ~ 7390490 (-) | True | CI01000039_07385848_07389331 |
| CI01000039_07401817_07402410.mRNA | mRNA | upstream | 43751 | 7400571 ~ 7402639 (-) | True | CI01000039_07401817_07402410 |
| CI01000039_07450597_07454594.mRNA | mRNA | upstream | 92988 | 7449808 ~ 7454630 (-) | True | CI01000039_07450597_07454594 |
| CI01000039_07498583_07505779.mRNA | mRNA | upstream | 141683 | 7498503 ~ 7506602 (-) | True | CI01000039_07498583_07505779 |
| CI01000039_07523213_07573865.mRNA | mRNA | upstream | 166377 | 7523197 ~ 7576151 (-) | True | CI01000039_07523213_07573865 |
| TU207766 | other | downstream | 217203 | 7134107 ~ 7134198 (-) | True | G182956 |
| TU207638 | other | downstream | 706394 | 6647527 ~ 6648576 (-) | False | CI01000039_06647926_06651530 |
| TU207627 | other | downstream | 719770 | 6634547 ~ 6635200 (-) | True | G182827 |
| TU207563 | other | downstream | 846537 | 6507955 ~ 6508433 (-) | True | G182771 |
| TU207225 | other | downstream | 1718370 | 5636247 ~ 5636600 (-) | True | G182470 |
| TU208115 | other | upstream | 615296 | 7972116 ~ 7975045 (-) | True | G183261 |
