RNA id: CI01000046_00461851_00464237.mRNA


Basic Information

Item Value
RNA id CI01000046_00461851_00464237.mRNA
length 910
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000046_00461851_00464237
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 461715 ~ 464237 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCGAAAACTCAAAAAAACTCACTTGGTCCGACAAAGACGTCAAAGTGGTGCAAAAACTAAGCGACCTCGATGAATATGACAATGACCCTGCTGTTTTAAGAGTTCAGATGTCTTGCGGTCATGTCGCAGATCCGCTGACACTGACAGACTGCTGCAAAGCTCAACTGTCAGATGGAGAAACAGTATTTAAGTGTATTCTGTGTGAGAAAGTATGGCCATATGATGAAGTCCGAAAATCCGCCAAACTAACAAATAATGAGCGAATAGGTTTTGAGGATAAGCTTGGAACAAATGCTGTTAAGAAGTCTGTTGAAAGCGTAAAGGATTGTCCTGGCTGTGGCACTTTTATTCAGAGGGTGCACACTACCAATCTCGCCGTAGAATGCTTACTCTGCACAGAAAAGACCGGGAAAATCTATGAATTCTGCTGGCAGTGTCAGAGAGAGTGGAAAGGGCCTCGACCTCGTGACGATCAGTGTGAAAATGTGGGTTGCAACATCAAGGACCGGGAACTACTTAAAGACTGTTCAATGGTCACTTTAACATCTGTGCAAAATGTCCTGTGTCCAGCGATTCGTGCCTGCCCATTTTGTGGTGTGCTGATTGAACACCTGCAAATTGGATGTAAAATTATGACATGCAAGAAATGTAACAGAGCGTTTTGCTTTGTCTGTCTTAAACCTGCTCAAGAGTGCCTACAAACATCCACTCATTATGTGTTATGCTCAGCTGAAGTCGCACCGAAGCAAGTAGAAGTTCTAAGATTGTGAGCAGATGTGCTGTAAATTATGCAGAAATGATGTTTATGTACAAATAATCTAGCATATTGTGCAATGCATATATATTCCGAGAATGATTTTAAATGATTTCCGATGTTTTTTTTTTTTTCTTTATTTGAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221627 lncRNA downstream 1190 458527 ~ 460525 (-) True G195107
TU221722 lncRNA downstream 6506 454937 ~ 455209 (-) True G195202
TU221640 lncRNA downstream 54428 406967 ~ 407287 (-) True G195120
TU221714 lncRNA downstream 73171 388127 ~ 388544 (-) True G195194
TU221709 lncRNA downstream 84554 376921 ~ 377161 (-) True G195189
TU221588 lncRNA upstream 102709 566946 ~ 573655 (-) True CI01000046_00567573_00573618
TU221775 lncRNA upstream 123888 588125 ~ 588385 (-) False G195245
TU221774 lncRNA upstream 123898 588135 ~ 588385 (-) True G195245
TU221781 lncRNA upstream 134048 598285 ~ 599020 (-) True G195249
TU221782 lncRNA upstream 134903 599140 ~ 599950 (-) True G195250
CI01000046_00446100_00446285.mRNA mRNA downstream 15430 445571 ~ 446285 (-) True CI01000046_00446100_00446285
CI01000046_00428495_00432835.mRNA mRNA downstream 28880 427619 ~ 432835 (-) True CI01000046_00428495_00432835
CI01000046_00399845_00400761.mRNA mRNA downstream 60903 399189 ~ 400812 (-) True CI01000046_00399845_00400761
CI01000046_00332581_00354353.mRNA mRNA downstream 107362 332581 ~ 354353 (-) True CI01000046_00332581_00354353
CI01000046_00224464_00306703.mRNA mRNA downstream 155012 224445 ~ 306703 (-) True CI01000046_00224464_00306703
CI01000046_00527690_00528880.mRNA mRNA upstream 63275 527512 ~ 528880 (-) True CI01000046_00527690_00528880
CI01000046_00557959_00566058.mRNA mRNA upstream 91302 555539 ~ 566877 (-) True CI01000046_00557959_00566058
CI01000046_00567573_00573618.mRNA mRNA upstream 102676 566913 ~ 575050 (-) False CI01000046_00567573_00573618
CI01000046_00589815_00591549.mRNA mRNA upstream 125411 589648 ~ 591549 (-) True CI01000046_00589815_00591549
CI01000046_00619217_00636285.mRNA mRNA upstream 154732 618969 ~ 636446 (-) True CI01000046_00619217_00636285
TU221615 other downstream 35389 407423 ~ 426326 (-) False G195097
TU221614 other downstream 35389 407470 ~ 426326 (-) True G195097
TU221564 other downstream 395804 63699 ~ 65911 (-) True G195066
TU221617 other upstream 206499 670736 ~ 676128 (-) True G195098
TU221589 other upstream 313496 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU223112 other upstream 1704029 2168266 ~ 2168644 (-) True G196463
TU224633 other upstream 2402022 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU225032 other upstream 3293386 3757623 ~ 3800101 (-) False G198265

Expression Profile