RNA id: CI01000046_00589815_00591549.mRNA


Basic Information

Item Value
RNA id CI01000046_00589815_00591549.mRNA
length 902
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000046_00589815_00591549
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 589648 ~ 591549 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTTGCTGTGTTTGTCCGCGGTGTTTCCCGTGTTGATGAGGACTGAAGTGGTCAAATCTGATTGCTTTCTTGCCACTGACTGCTCTGATGTTTATTCAAGTGGGAAAAGCAGCAGTGGTGTGTACACCATCTTCTCAATAGATGGACCGGTGCAGGTCTACTGTGACATGGTCCCCAGAGGAGAAAGTCAAAGCAAAGGCCACTGGACGGTGATTCTCAGGCGAATGGACGGCGAGGTGAATTTCTTTAGGCCATGGGACAGTTATAAACGGGGTTTTGGTAATAAAGAAGGCGAATACTGGCTGGGTTTAGAGTTTATTCACTTGCTGACACGCAGGAATCGGTATAAACTGAGAGTAGATCTGGAGGACTTTGATGGGACGAAGGCTTACGCTGTGTACGAGTCCTTCTCTGTGGATTCTGAGGCTGATGGGTACAAACTGCATGTCAGCGGCTTTATAGATGGAGGAGCAGGTGACTCTTTCAGTTACCAAAATGGAATGAAATTCTCCACCTTTGACAAAGACCAAGACCTTCGGAAAGATGGCTCCTGTGCTTTAAAATATTCTATGGGAGGGTTTTGGTACAACAATTGTGATCACACAAACCCCACTGGTCTGTATTTGTGGGGGAAGGAGGATGGCGCTTCGGTTATTTCGACCAACTGGTACTACTGGAAGAAAAACTGGAAATCTCTGAAGGCCATCACCATGAAGATCACACATGTGATGTAGACCAGGGGTTACAAATGCTTCACGACTGCAGCTTGTGCACATATATCCACAACTATTATACATTCATGTGGATCTTTCTTAAAATATGGCGACCAGCATGTCCCATCAGCTTTCAGTGAGGGAAAATTGCACATAAAATAATAATAATAATTGTCCTTTTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221775 lncRNA downstream 1263 588125 ~ 588385 (-) False G195245
TU221774 lncRNA downstream 1263 588135 ~ 588385 (-) True G195245
TU221588 lncRNA downstream 15993 566946 ~ 573655 (-) True CI01000046_00567573_00573618
TU221627 lncRNA downstream 129123 458527 ~ 460525 (-) True G195107
TU221722 lncRNA downstream 134439 454937 ~ 455209 (-) True G195202
TU221781 lncRNA upstream 6736 598285 ~ 599020 (-) True G195249
TU221782 lncRNA upstream 7591 599140 ~ 599950 (-) True G195250
TU221644 lncRNA upstream 78520 670069 ~ 670568 (-) True G195124
TU221624 lncRNA upstream 86711 678260 ~ 682667 (-) True G195104
TU221647 lncRNA upstream 92146 683695 ~ 684595 (-) True G195127
CI01000046_00567573_00573618.mRNA mRNA downstream 14598 566913 ~ 575050 (-) False CI01000046_00567573_00573618
CI01000046_00557959_00566058.mRNA mRNA downstream 22771 555539 ~ 566877 (-) True CI01000046_00557959_00566058
CI01000046_00527690_00528880.mRNA mRNA downstream 60768 527512 ~ 528880 (-) True CI01000046_00527690_00528880
CI01000046_00461851_00464237.mRNA mRNA downstream 125411 461715 ~ 464237 (-) True CI01000046_00461851_00464237
CI01000046_00446100_00446285.mRNA mRNA downstream 143363 445571 ~ 446285 (-) True CI01000046_00446100_00446285
CI01000046_00619217_00636285.mRNA mRNA upstream 27420 618969 ~ 636446 (-) True CI01000046_00619217_00636285
CI01000046_00660745_00664133.mRNA mRNA upstream 67655 659204 ~ 664133 (-) True CI01000046_00660745_00664133
CI01000046_00665298_00665879.mRNA mRNA upstream 73749 665298 ~ 665879 (-) True CI01000046_00665298_00665879
CI01000046_00690567_00697727.mRNA mRNA upstream 98591 690140 ~ 699872 (-) True CI01000046_00690567_00697727
CI01000046_00702360_00703954.mRNA mRNA upstream 110390 701939 ~ 703954 (-) True CI01000046_00702360_00703954
TU221615 other downstream 163322 407423 ~ 426326 (-) False G195097
TU221614 other downstream 163322 407470 ~ 426326 (-) True G195097
TU221564 other downstream 523737 63699 ~ 65911 (-) True G195066
TU221617 other upstream 79187 670736 ~ 676128 (-) True G195098
TU221589 other upstream 186184 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU223112 other upstream 1576717 2168266 ~ 2168644 (-) True G196463
TU224633 other upstream 2274710 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU225032 other upstream 3166074 3757623 ~ 3800101 (-) False G198265

Expression Profile