RNA id: CI01000046_00665298_00665879.mRNA


Basic Information

Item Value
RNA id CI01000046_00665298_00665879.mRNA
length 582
RNA type mRNA
GC content 0.55
exon number 1
gene id CI01000046_00665298_00665879
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 665298 ~ 665879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTGCGAGTCTCATCCGTGTCTCTTACTTTAATTCCAGTGTTCATTTTATGGGGCACAGAGTGTGTCCTGCTGCGAAAAGCTTCAAAACTGTGGCTGCAGCCGCTGAACGAGACGCACCTGCAGACTGGGACGTTTCCCAGCGGGTTCCTGTGGGGCGTCGGGACCTCGGCGTTCCCGACCGAAGGCTCCTGGGATGCAGATGGGAAGGGTGAGTCCGTGTGGGACCGTTTCACCCATCATTCCCGCACAGACAGATCGGCCAGTGACAGTTATGTTCAGTGGGAAGAGGATTTGAGATCGGTTCAGTATTTGGGTGTGAAGTTCTACACCTTTTCTCTCTCCTGGCCCCGACTTTTCCCTGATGGAGACATAACTGCGAATCCCAACCCAGCCGGAGTGGAACATTACCGGCGTTTGATCGGCAAGTTAAAGGAGCTTCAGGTGGAGCCTGTGGTGACTCTGTTTCACTGGGATTTACCGCAGGTCCTGCAGGAGCGCTTCGGAGGCTGGCTGAACCGGAGCATGGTGGACGTCTTCGCAGATTACGCTGCGTTTTGTTTCCAGACGTTTGGTGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221782 lncRNA downstream 65348 599140 ~ 599950 (-) True G195250
TU221781 lncRNA downstream 66278 598285 ~ 599020 (-) True G195249
TU221775 lncRNA downstream 76913 588125 ~ 588385 (-) False G195245
TU221774 lncRNA downstream 76913 588135 ~ 588385 (-) True G195245
TU221588 lncRNA downstream 91643 566946 ~ 573655 (-) True CI01000046_00567573_00573618
TU221644 lncRNA upstream 4190 670069 ~ 670568 (-) True G195124
TU221624 lncRNA upstream 12381 678260 ~ 682667 (-) True G195104
TU221647 lncRNA upstream 17816 683695 ~ 684595 (-) True G195127
TU221800 lncRNA upstream 38554 704433 ~ 722196 (-) False G195268
TU221801 lncRNA upstream 38554 704433 ~ 721711 (-) True G195268
CI01000046_00660745_00664133.mRNA mRNA downstream 1165 659204 ~ 664133 (-) True CI01000046_00660745_00664133
CI01000046_00619217_00636285.mRNA mRNA downstream 28852 618969 ~ 636446 (-) True CI01000046_00619217_00636285
CI01000046_00589815_00591549.mRNA mRNA downstream 73749 589648 ~ 591549 (-) True CI01000046_00589815_00591549
CI01000046_00567573_00573618.mRNA mRNA downstream 90248 566913 ~ 575050 (-) False CI01000046_00567573_00573618
CI01000046_00557959_00566058.mRNA mRNA downstream 98421 555539 ~ 566877 (-) True CI01000046_00557959_00566058
CI01000046_00690567_00697727.mRNA mRNA upstream 24261 690140 ~ 699872 (-) True CI01000046_00690567_00697727
CI01000046_00702360_00703954.mRNA mRNA upstream 36060 701939 ~ 703954 (-) True CI01000046_00702360_00703954
CI01000046_00749734_00763064.mRNA mRNA upstream 83805 749684 ~ 763481 (-) True CI01000046_00749734_00763064
CI01000046_00777923_00780186.mRNA mRNA upstream 111793 777672 ~ 780186 (-) False CI01000046_00777923_00780186
CI01000046_00790248_00814884.mRNA mRNA upstream 124304 790183 ~ 814884 (-) True CI01000046_00790248_00814884
TU221615 other downstream 238972 407423 ~ 426326 (-) False G195097
TU221614 other downstream 238972 407470 ~ 426326 (-) True G195097
TU221564 other downstream 599387 63699 ~ 65911 (-) True G195066
TU221617 other upstream 4857 670736 ~ 676128 (-) True G195098
TU221589 other upstream 111854 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU223112 other upstream 1502387 2168266 ~ 2168644 (-) True G196463
TU224633 other upstream 2200380 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU225032 other upstream 3091744 3757623 ~ 3800101 (-) False G198265

Expression Profile